Publications récentes

Griot R, Allal F, Phocas F, Brard-Fudulea S, Morvezen R, Haffray P, François Y, Morin T, Bestin A, Bruant J-S, Cariou S, Peyrou B, Brunier J, Vandeputte M. 2021. Optimization of Genomic Selection to Improve Disease Resistance in Two Marine Fishes, the European Sea Bass (Dicentrarchus labrax) and the Gilthead Sea Bream (Sparus aurata). Front Genet. 12 GenAqua
   
López-García A, Benítez R, Núñez Y, Gómez-Izquierdo E, de Mercado E, García-Casco JM, González-Recio O, López-Bote C, Estellé J, Óvilo C. 2021. Influence of genetic background and dietary oleic acid on gut microbiota composition in Duroc and Iberian pigs. PlosOne GeMS  

Rodde C, de Verdal H, Vandeputte M, Allal F, Nati J, Besson M, Blasco FR, Benzie JAH, McKenzie DJ. 2021. An investigation of links between metabolic rate and feed efficiency in European sea bass Dicentrarchus labrax. J Anim Sci. 99 GenAqua

Tixier-Boichard M, Fabre S, Dhorne-Pollet S, Goubil A, Acloque H, Vincent-Naulleau S, Ross P, Wang Y, Chanthavixay G, Cheng H, Ernst C, Leesburg V, Giuffra E, Zhou H, the Collaborative Working Group.  2021. Tissue Resources for the Functional Annotation of Animal Genomes. Front Genet. 12 GiBBS, PT, BIGE, GeMS

Publications 2021

Allais-Bonnet A., Hintermann A., Deloche M.C., Cornette R., Bardou P., Naval-Sanchez M., Pinton A., Haruda A., Grohs C., Zakany J., Bigi D., Medugorac I., Putelat O., Greyvenstein O., Hadfield T., Ben Jemaa S., Bunevski G., Menzi F., Hirter N., Paris J.M., Hedges J., Palhiere I., Rupp R., Lenstra J.A., Gidney L., Lesur J., Schafberg R., Stache M., Wandhammer M.D., Arbogast R.M., Guintard C., Blin A., Boukadiri A., Rivière J., Esquerré D., Donnadieu C., Danchin-Burge C., Reich C.M., Riley D.G., van Marle-Koster E., Cockett N., Hayes B.J., Drögemüller C., Kijas J., Pailhoux E., Tosser-Klopp G., Duboule D., Capitan A. 2021. Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae. Molecular Biology and Evolution, msab021

Barsoe S, Allal F, Vergnet A, Vandeputte M, Olesen NJ, Schmidt JG, Larsen CA, Cuenca A, Vendramin N. 2021. Different survival of three populations of European sea bass (Dicentrarchus labrax) following challenge with two variants of nervous necrosis virus (NNV). Aquaculture Report. 19.

Blanc M, Antczak P, Cousin X, Grunau C, Scherbak N,Rüegg J,Keiter SH. 2021. The insecticide permethrin induces transgenerational behavioral changes linked to transcriptomic and epigenetic alterations in zebrafish (Danio rerio). Sci Total Environ. 779, 146404

Beaumont M, Blanc F, Cherbuy C, Egidy G, Giufra E, Lacroix‑Lamandé S, Wiedemann A. 2021. Intestinal organoids in farm animals. Vet Res. 52, 33

Ben Abdelkrim A, Puillet L, Gomes P, Martin O. 2021. Lactation curve model with explicit representation of perturbations as a phenotyping tool for dairy livestock precision farming. Animal. 15, 100074

Ben Abdelkrim A, Tribout T, Martin O, Boichard D, Ducrocq V, Friggens NC. 2021. Exploring simultaneous perturbation profiles in milk yield and body weight reveals a diversity of animal responses and new opportunities to identify resilience proxies. J Dairy Sci. 104, 459-470

Ben Braiek M, Fabre S, Hoze C, Astruc JM, Moreno-Romieux C. 2021. Identification of homozygous haplotypes carrying putative recessive lethal mutations compromising fertility traits in French Lacaune dairy sheep. Genet Sel Evol. 53, 41.

Ben-Jemaa S, Senczuk G, Ciani E, Ciampolini R, Catillo G, Boussaha M, Pilla F, Portolano B, Mastrangelo S. 2021. Genome-wide analysis reveals selection signatures involved in meat traits and local adaptation in semi-feral Maremmana cattle. Front Genet. 12, 675569

Bérodier M, Berg P, Meuwissen T, Boichard D, Brochard M,  Ducrocq V. 2021. Improved dairy cattle mating plans at herd level using genomic information. Animal. 15, 10016

Bestin A, Brunel O, Malledant A, Debeuf B, Benoit P, Mahla R, Chapuis H, Guémené D, Vandeputte M, Haffray P.  2021. Genetic parameters of caviar yield, color, size and firmness using parentage assignment in an octoploid fish species, the Siberian sturgeon Acipenser baerii. Aquacul. 540, 736725.

Billa PA , Faulconnier Y, Ye T, Bourdon C ,Pires JAA, Leroux C. 2021. Nutrigenomic analyses reveal miRNAs and mRNAs affected by feed restriction in the mammary gland of midlactation dairy cows. PlosOne. 16, e0248680

Blanc F,  Maroilley T,  Revilla M, Lemonnier G, Leplat JJ,  Billon Y, Ravon L, Bouchez O, Bidanel JP, Bed’Hom B, Pinard‑van der Laan MH, Estellé J, Rogel‑Gaillard C. 2021. Influence of genetics and the pre-vaccination blood transcriptome on the variability of antibody levels after vaccination against Mycoplasma hyopneumoniae in pigs. Genet Sel Evol. 53, 24

Blanc M, Alfonso S, Begout ML, Barrachina C, Hyotylainen T, Keiter SH, Cousin X. 2021. An environmentally relevant mixture of polychlorinated biphenyls (PCBs) and polybrominated diphenylethers (PBDEs) disrupts mitochondrial function, lipid metabolism and neurotransmission in the brain of exposed zebrafish and their unexposed F2 offspring. Sci Total Environ. 754, 142097

Blay C, Haffray P,Bugeon J, D’Ambrosio J, Dechamp N, Collewet G, Enez F, Petit V, Cousin X, Corraze G, Phocas F, Dupont-Nivet M. 2021. Genetic Parameters and Genome-Wide Association Studies of Quality Traits Characterised Using Imaging Technologies in Rainbow Trout, Oncorhynchus mykiss’. Front Genet. 12, 639223

Boitard S, Paris C, Sevane N, Servin B, Bazi-Kabbaj K, Dunner S. 2021. Gene Banks as Reservoirs to Detect Recent Selection: The Example of the Asturiana de los Valles Bovine Breed. Front Genet. 12, 575405

Boudry P, Allal F, Aslam ML, Bargelloni L, Bean TP, Brard-Fudulea S, Brieuc MSO, Calboli FCF, Gilbey J, Haffray P, Lamy JB, Morvezen R, Purcell C, Prodohl PA, Vandeputte M, Waldbieser GC, Sonesson AK, Houston RD. 2021. Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of the Sea (ICES) member countries. Aquaculture Report. 20, 100700

Boufroura FZ, Tomkiewicz‑Raulet C, Poindessous V, Castille J, Vilotte JL,  Bastin J, Mouillet‑Richard S, Djouadi F. 2021. Cellular prion protein dysfunction in a prototypical inherited metabolic myopathy. Cell Mol Life Sci. ahead of print.

Castille J, Passet B, Makhzami S, Vilotte M, Moazami-Goudarzi K, Truchet S, Daniel-Carlier N, Gaillard AL, Andréoletti O, Vaiman D, Beauvallet C, Vaiman A, Floriot S, Calvel P, Mouillet-Richard S, Duchesne A, Béringue V, Vilotte JL. 2021. Co-invalidation of Prnp and Sprn in FVB/N mice affects reproductive performances and highlight complex biological relationship between PrP and Shadoo. Biochem Biophys Res Commun. 551.

Charvolin-Lemaire E, Laloë D. 2021. Evolution du concept de race et sa pertinence au début du XXIe siècle. Ethnozootechnie. 109, 47-52

Chankeaw W, Lignier S, Richard C, Ntallaris T, Raliou M, Guo YZ, Plassard D, Bevilacqua C, Sandra O, Andersson G, Humblot P, Charpigny G. 2021 . Analysis of the transcriptome of bovine endometrial cells isolated by laser micro-dissection (1): specific signatures of stromal, glandular and luminal epithelial cells. BMC Genomics. 22

Chankeaw W, Lignier S, Richard C, Ntallaris T, Raliou M, Guo YZ, Plassard D, Bevilacqua C, Sandra O, Andersson G, Humblot P, Charpigny G. 2021. Analysis of the transcriptome of bovine endometrial cells isolated by laser micro-dissection (2): impacts of post-partum negative energy balance on stromal, glandular and luminal epithelial cells. BMC Genomics. 22

Cormier B, Gambardella C, Tato T, Perdriat Q, Costa E, Veclin C, Le Bihanic F, Grassl B, Dubocq, Karrman A, Van Arkel K,  Lemoine S, Lagarde F, Morin B, Garaventa F, Faimali M, Cousin X, Begout ML, Beiras R, Cachot J. 2021. Chemicals sorbed to environmental microplastics are toxic to early life stages of aquatic organisms. Ecotoxicol Environ Saf. 208, 111665

Cormier B, Le Bihanic F, Cabar M, Crebassa JC, Blanc M, Larsson M, Dubocq F, Yeung L, Clérandeau C, Keiter SH, Cachot J, Bégout ML, Cousin X. 2021. Chronic feeding exposure to virgin and spiked microplastics disrupts essential biological functions in teleost fish. J Haz Mat. 125626

Davaine C, Hadadi E, Taylor W, Bennaceur-Griscelli A, Acloque H. 2021. Inducing Sequential Cycles of Epithelial-Mesenchymal and Mesenchymal-Epithelial Transitions in Mammary Epithelial Cells. Methods Mol Biol. 2179, 341-351

David GM, López-García P, Moreira D, Alric B, Deschamps P, Bertolino P, Restoux G, Rochelle-Newall E, Thébault E, Simon M, Jardillier L. 2021.  Small freshwater ecosystems with dissimilar microbial communities exhibit similar temporal patterns. Mol Ecol. 11

Degalez F, Jehl F, Muret K, Bernard M, Lecerf F, Lagoutte L, Désert C, Pitel F, Klopp C, Lagarrigue S. 2021. Watch Out for a Second SNP: Focus on Multi-Nucleotide Variants in Coding Regions and Rescued Stop-Gained. Front Genet.

De Oliveira J, Chadili E, Turies C, Brion F, Cousin X, Hinfray N. 2021. A comparison of behavioral and reproductive parameters between wild-type, transgenic and mutant zebrafish: Could they all be considered the same "zebrafish" for reglementary assays on endocrine disruption? Comp Biochem Physiol C Toxicol Pharmacol. 239, 108879

De Oliveira Silva R, Gardyn OC, Hiemstra SJ,  Marques JGO, Tixier-Boichard M, Moran, D. 2021. Ex situ and in situ data for endangered livestock breeds in Spain. Data in Brief, 35

Destoumieux-Garzón D, Bonnet P, Teplitsky C, Criscuolo F, Henry PY, Mazurais D, Prunet P, Salvat G, Usseglio-Polatera P, Verrier E, Friggens N. 2021. OneARK: Strengthening the links between animal production science and animal ecology. Animal, 15: 100053

DeVogel N, Auer PL,  Manansala R, Rau A, Wang T. 2021. A unified linear mixed model for familial relatedness and population structure in genetic association studies. Genet Epidemiol. in press

Dugué M, Dumont Saint Priest B, Crichan H, Danvy S, Ricard A. 2021. Genomic correlations between the gaits of young horses measured by accelerometry and functional longevity in jumping competition. Front Genet. 12, 619947

Escouflaire C, Capitan A. 2021. Analysis of pedigree data and whole-genome sequences in 12 cattle breeds reveals extremely low within-breed Y-chromosome diversity. Anim Genet

Faggion S, Vandeputte M, Vergnet A, Clota F, Blanc M-O, Sanchez P, Ruelle F, Allal F. 2021. Sex dimorphism in European sea bass (Dicentrarchus labrax L.): New insights into sex-related growth patterns during very early life stages. PlosOne

Femenia M, Charles M, Boulling A, Rocha D. 2021. Identification and characterisation of mitochondrial sequences integrated into the ovine nuclear genome. Anim Genet

Floriot S, Duchesne D, Grohs C, Hozé C, Deloche MC, Fayolle G, Vilotte JL, Boichard D, Fritz S,  Boussaha M. 2021. A missense mutation in the FZD7 gene is associated with dilution of the red areas of the coat in Montbéliarde cattle. Anim Genet. 52, 351-355.

Gefroy B, Gesto M, Clota F, Aerts J, Darias MF, Blanc M-O, Ruelle F, Allal F, Vandeputte M. 2021. Parental selection for growth and early‑life low stocking density increase the female‑to‑male ratio in European sea bass. Scient Report.

Griot R, Allal F, Phocas F, Brard-Fudulea S, Morvezen R, Bestin A, Haffray P, François Y, Morin T, Poncet C, Vergnet A, Cariou S, Brunier J, Bruant JS, Peyrou B, Gagnaire PA, Vandeputte M. 2021. Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip. Aquaculture. 530, 735930

Hadadi E, Acloque H. 2021. Role of circadian rhythm disorders on EMT and tumour-immune interactions in endocrine-related cancers. Endocr Relat Cancer. 28, R67-R80

Hadadi E, Acloque H. 2021. Effets des altérations du rythme circadien sur l’évolution du cancer du sein. Med Science. 37, 538-541

Hue-Beauvais C, Faulconnier Y, Charlier M, Leroux C. 2021. Nutritional Regulation of Mammary Gland Development and Milk Synthesis in Animal Models and Dairy Species. Genes. 12, 523

Ivanova E, Le Guillou S, Hue-Beauvais C, Le Provost F. 2021. Epigenetics: New Insights into Mammary Gland Biology. Genes. 12, 231

Jehl F, Degalez F, Bernard M, Lecerf F, Lagoutte L, Désert C, Coulée M, Bouchez O, Leroux S, Abasht B, Tixier-Boichard M, Bed’hom B, Burlot T, Gourichon D, Bardou P, Acloque H, Foissac S, Djebali S, Giuffra E, Zerjal T, Pitel F, Klopp C, Lagarrigue S. 2021. RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species. Front Genet.

Lallias D, Bernard M, Ciobotaru C, Dechamp N, Labbé L, Goardon L, Le Calvez JM, Bideau M,Fricot A, Prézelin A, Charles M, Moroldo M, Cousin X, Bouchez O, Roulet A, Quillet E,  Dupont-Nivet M. 2021. Sources of variation of DNA methylation in rainbow trout: combined effects of temperature and genetic background. Epigenetics. in press.

Lefebvre R, Larroque H, Barbey S, Gallard Y, Colleau JJ, Lainé AL, Boichard D, Martin P. 2021. Genome-wide association study for age at puberty and resumption of cyclicity in a crossbred dairy cattle population. J. Dairy Sci. 104, 104, 5794-5804

Leroy G, Verrier E. 2021. Contribution des ressources génétiques animales aux services écosystémiques liés au développement territorial. Essais. 6, 79-87

Lu J, Le Hir R, Gomez-Paez D-M, Coen O, Pechoux C, Jasinski S, Magnani E. 2021. The nucellus: between cell elimination and sugar transport. Plant Physiol. 185, 478-490

Mach N, Baranowski E, Nouvel LX, Citti C. 2021. The Airway Pathobiome in Complex Respiratory Diseases: A Perspective in Domestic Animals. Front Cell Infect Microbiom. 11, 583600

Mach N, Lansade L, Bars‑Cortina D ,Dhorne‑Pollet S, Foury A, Moisan MP, Ruet A. 2021. Gut microbiota resilience in horse athletes following holidays out to pasture. Sci Rep. 11, 5007

Mach N, Moroldo M, Rau A, Lecardonnel J, Le Moyec L, Robert C, Barrey E. 2021. Understanding the Holobiont: Crosstalk Between Gut Microbiota and Mitochondria During Long Exercise in Horse. Front. Mol. Biosci.  8, 656204

Mariadassou M, Suez M, Sathyakumar S, Vignal A, Arca M, Nicolas P, Faraut T, Esquerré D, Nishibori M, Vieaud A, Chen CF, Manh Pham H, Roman Y, Hospital F, Zerjal T, Rognon X, Tixier-Boichard M. 2021. Unraveling the history of the genus Gallus through whole genome sequencing. Mol Phylogenet Evol. 158, 107044

Martin P, Ducrocq V, Faverdin P, Friggens NC. 2021. Disentangling residual feed intake—Insights and approaches to make it more fit for purpose in the modern context. J Dairy Sci. 104

Martin P, Ducrocq V, Gordo DGM, Friggens NC. 2021. A new method to estimate residual feed intake in dairy cattle using time series data. Animal, 15, 100101

Martin P, Vinet A, Denis C, Grohs C, Chanteloup L, Dozias D, Maupetit D, Sapa J, Renand G, Blanc F. 2021. Determination of immunoglobulin concentrations and genetic parameters for colostrum and calf serum in Charolais animals. J Dairy Sci. 104, 3240–3249

Mollandin F, Rau A, Croiseau P. 2021. Evaluating the Interpretability of SNP Effect Size Classes in Bayesian Genomic Prediction Models. Hum Heredity, 85-86

Niel R, Le Moyec L, Launay T, Mille-Hamard L, Triba MN, Maciejak O, Billat VL, Momken I. 2021. Physical performance level in sarcomeric mitochondria creatine kinase knockout mouse model throughout ageing. Exp Gerontol. 46, 111246

Pan Q, Feron R, Jouanno E, Darras H, Herpin A, Koop B, Rondeau E, Goetz FW, Larson WA, Bernatchez L, Tringali M, Curran SS, Saillant E, Denys GPJ, von Hippel FA, Chen S, Lopez JA, Verreycken H, Ocalewicz K, Guyomard R, Eche C, Lluch J, Roques C, Hu H, Tabor R, DeHaan P, Nichols KM, Journot L, Parrinello H, Klopp C, Interesova EA, Trifonov V, Schartl M, Postlethwait J, Guiguen Y. 2021. The rise and fall of the ancient northern pike master sex-determining gene. eLife. 10, e62858

Prakoso VA, Pouil S, Cahyanti W, Sundari S, Arifin OZ, Subagja J, Kristanto AH, Slembrouck J. 2021. Fluctuating temperature regime impairs growth in giant gourami (Osphronemus goramy) larvae. Aquaculture, 539

Puillet L, Ducrocq V, Friggens NC, Amer PR. 2021. Exploring underlying drivers of genotype by environment interactions in feed efficiency traits for dairy cattle with a mechanistic model involving energy acquisition and allocation. J Dairy Sci. 24: 5805-5816

Ramírez‑Ayala LC, Rocha D, Ramos‑Onsins SE, Leno‑Colorado J, Charles M, Bouchez O, Rodríguez‑Valera Y, Pérez‑Enciso, M, Ramayo‑Caldas Y. 2021. Whole‑genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions. Genet Sel Evol. 53, 3

Rau A, Manansala R, Flister MJ, Rui H, Jaffrézzic F, Laloë D, Auer PL. 2021. Individualized multi-omic pathway deviation scores using multiple factor analysis. Biostatistics. in press.

Ricard A, Duluard A. 2021. Genomic analysis of gaits and racing performance of the French trotter. J Anim Breed Genet. early access

Rogel-Gaillard C. 2021. Evolutions de la recherche en génétique animale et anticipation des besoins de formation. Ethnozootechnie. 109, 29-40

Rognon X, Heams T, Ducos A, Charpentier R, Magnol L, Restoux G, Rigal J, Verrier E. 2021. Evolutions et perspectives des formations pour la génétique et la sélection animale. Ethnozootechnie. 109, 11-18

Rohmer T, Ricard A, David I. 2021. Assessing the Impact of the Non-Gaussian Dependence Structure in the REML Estimation of the Multivariate Genetic Model. Hum Hered,  85-90

Sanchez MP, Rocha D, Charles M, Boussaha M, Hozé C, Brochard M, Delacroix-Buchet A, Grosperrin P, Boichard D. 2021. Sequence-based GWAS and post-GWAS analyses reveal a key role of SLC37A1 and ANKH genes and gene regulatory regions on bovine milk minerals. Sci Rep. 11, 7537

Schwochow D, Bornelöv S, Jiang T, Li J, Gourichon D, Bed’Hom B, DorshorstBJ, Chuong, C-M, Tixier-Boichard M, Andersson L. 2021. The feather pattern autosomal barring in chicken is strongly associated with segregation at the MC1R locus. Pigm cell Melanoma

Sellem E, Marthey S, Rau A, Jouneau L, Bonnet A, Le Danvic C, Guyonnet B, Kiefer H, Jammes H, Schibler L. 2021. Dynamics of cattle sperm sncRNAs during maturation, from testis to ejaculated sperm. Epig Chrom, 14

Silva RD, Gardyn OC, Hiemstra SJ, Marques JGO, Tixier-Boichard M, Moran, D. 2021. Rationalizing ex situ collection of reproductive materials for endangered livestock breed conservation. Ecol Econ. 181, 106916

Vandeputte M, Bestin A, Fauchet L, Allamellou JM, Bosc S, Menchi o, Haffray P. 2021. Can we identify wild-born salmon from parentage assignment data? A case study in the Garonne-Dordogne rivers salmon restoration programme in France. Aquat Living Resour.

Verrier E, Markey L, Lauvie A. 2021. Valorisation des races animales locales par des produits liés à leur territoire : cinq leçons tirées de cas variés en France. Essais. 6, 35-45

Verrier E, Rognon X, Patin S, Del Porto P. 2021. L'héritage de Jacques Bougler. Ethnozootechnie. 109, 7-10

Vinet A, Bouyer C, Forestier L, Oulmouden A, Blanquet V, Picard B, Cassar-Malek I, Bonnet M, Rocha D, Renand G. 2021. The Blonde d’Aquitaine T3811>G3811 mutation in the myostatin gene: association with growth, carcass, and muscle phenotypes in veal calves. J Anim Sci. 99, skab039

Zerjal T, Härtle S, Gourichon D, Guillory V, Bruneau N, Laloë D, Pinard‑van der Laan M-H, Trapp S, Bed’hom B, Quéré P. 2021. Assessment of trade-ofs between feed efciency, growth-related traits, and immune activity in experimental lines of layer chickens. Genet Sel Evol. 53, 44