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24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018

Menu Logo Principal AgroParisTech Université Paris-Saclay


GABI : Génétique Animale et Biologie IntégrativeUnité Mixte de Recherche INRA - AgroParisTech


Our publications

Recent publications

Béringue V, Tixador P, Andréoletti O, Reine F, Castille J, Laï TL, Le Dur A, Laisné A, Herzog L, Passet B, Rezaei H, Vilotte JL, Laude H. 2020. Host prion protein expression levels impact prion tropism for the spleen. PLoS Pathog. 16, e1008283
Cantalapiedra-Hijar G, Guarnido P, Schiphorst AM, Robins RJ, Renand G, Ortigues-Marty I. 2020. Natural N-15 abundance in specific amino acids indicates associations between transamination rates and residual feed intake in beef cattle. J Anim Sci. 98, UNSP skaa171.   
Fraslin C, Quillet E, Rochat T, Dechamp N, Bernardet JF, Collet B, Lallias D, Boudinot P. 2020. Combining multiple approaches and models to dissect the genetic architecture of resistance to infections in fish. Front Genet. 11, 677

Godichon-Baggioni A, Maugis-Rabusseau C, Rau A. 2020. Multiview cluster aggregation and splitting, with an application to multiomic breast cancer data. Ann Appl Stat.   14, 752-767 

Mariadassou M, Ramayo-Caldas Y , Charles M, Femenia M, Renand G, Rocha D. 2020. Detection of selection signatures in Limousin cattle using wholegenome resequencing. Anim Genet. in press.

Shrestha M, Garreau H, Balmisse E , Bed'hom B, David I, Guitton E, Helloin E, Lenoir G, Maupin M,  Robert R, Lantier F, Gunia M. 2020. Genetic parameters of resistance to pasteurellosis using novel response traits in rabbits. Genet sel Evol. 52, 34

Van Den Berg I, Xiang R, Jenko J, Pausch H, Boussaha M, Tribout T, Gjuvsland AB, Boichard D, Nordbø Ø., Sanchez MP, Goddard ME. 2020. Large scale multi breed meta-analysis for fat and protein percentage using imputed sequence variant genotypes in 94,321 cattle from eight dairy breeds. Genet Sel Evol. 52, 37

Zhang J, Kadri N, Mullaart E, Spelman R, Fritz S, Boichard D, Charlier C, Georges M, Druet T. 2020. Genetic architecture of individual variation in recombination rate on the X-chromosome in cattle. Heredity, ehead of print


Alfonso S, Peyrafort M, Cousin X, Bégout ML. 2020. Zebrafish, Danio rerio, show behavioural cross-context consistency at larval and juvenile stages but no consistency between stages. J Fish Biol. In press

Alfonso S, Sadoul B, Cousin X, Bégout ML. 2020. Spatial distribution and activity patterns as welfare indicators in response to water quality changes in European sea bass, Dicentrarchus labrax. Appl Anim Behav Sci. In press

Arnal M, Larroque H, Leclerc H, Ducrocq V, Robert-Granié C. 2020. Estimation of genetic parameters for dairy traits and somatic cell score in the first 3 parities using a random regression test-day model in French Alpine goats. J Dairy Sci. 103, 4517-4531

Artus J, Hue I, Acloque H. 2020. Preimplantation development in ungulates: a 'ménage à quatre' scenario. Reproduction. 159, R151-R171

Auclair-Ronzaud J, Benoist S, Dubois C, Frejaville M, Jousset T, Jaffrézic F, Wimel L, Chavatte-Palmer P. 2020. No-contact microchip monitoring of body temperature in yearling horses. J Equine Vet Sci. 86, 102892

Aujean E, Laubier J,  Brun N, Finot L, Chanat E, Dessauge F, Hue-Beauvais C, Le Provost F. 2020. Genomic DNA PCR analysis to assess xenograft development in mouse mammary gland. BioTechniques. 68, i press

Bagheri-Fam S, Chen, HJ, Wilson S, Ayers K, Hughes J,  Sloan-Bena F, Calvel P, Robevska G, Puisac B, Kusz-Zamelczyk K, Gimelli S, Spik A, Jaruzelska J, Warenik-Szymankiewicz A, Faradz S, Nef S, Pie J, Thomas P, Sinclair A, Wilhelm D. 2020. The gene encoding the ketogenic enzyme HMGCS2 displays a unique expression during gonad development in mice. PLoS One. 15, e0227411

Bhave K, Koilpillai TPJ, Ragothaman V, Sontakke S, Josh G, Ducrocq V. 2020. Semen production and semen quality of indigenous buffalo breeds under hot semiarid climatic conditions in India. Trop Anim Health Prod. ahead print

Besson M, Komen H, Rose G, Vandeputte M. 2020. The genetic correlation between feed conversion ratio and growth rate affects the design of a breeding program for more sustainable fish production. Genet sel Evol. 52, 5

Bidanel JP,  Silalahi P, Tribout T, Canario L, Ducos A, Garreau H, Gilbert H, Larzul C, Milan D, Riquet J, Schwob S, Mercat MJ, Hassenfratz C, Bouquet A, Bazin C, Bidanel J. 2020. Cinquante années d’amélioration génétique du porc en France : bilan et perspectives. INRAE Prod Anim. 33, 1-16

Bignon Y, Poindessous V, Lazareth H, Passet B, Vilotte JL, Djouadi F, Mouillet-Richard S, Pallet N. 2020. The cellular prion protein is a stress protein secreted by renal tubular cells and a urinary marker of kidney injury. Cell Death Dis. 11, 243

Blanc F, Prévost-Blondel A, Piton G, Bouguyon E, Leplat JJ, Andréoletti F, Egidy G, Bourneuf E, Bertho N, Vincent-Naulleau S. 2020. The composition of circulating leukocytes varies with age and melanoma onset in the MeLiM pig biomedical model. Front Immunol. 11, 291

Borey M, Estellé J, Caidi A, Bruneau N, Coville JL,  Hennequet-Antier C, Mignon-Grasteau S, Calenge F. 2020. Broilers divergently selected for digestibility differ for their digestive microbial ecosystems. PLoS One. 15, e0232418.

Carvalho AV, Hennequet-Antier C, Crochet S, Bordeau T, Courousse N, Cailleau-Audouin E, Chartrin P, Darras VM, Zerjal T, Collin A, Coustham V. 2020. Embryonic thermal manipulation has short and long-term effects on the development and the physiology of the Japanese quail. PLoS One. 15, e0227700

Coen O, Lu J, Xu WJ, Pateyron S, Grain D, Péchoux C, Lepiniec L, Magnani E. 2020. A TRANSPARENT TESTA transcriptional module regulates endothelium polarity. Front Plant Sci. 10, 1801

Curcio A, Van de Walle A, Serrano A, Preveral S, Péchoux C, Pignol D, Menguy N, Lefevre CT, Espinosa A, Wilhelm C. 2020. Transformation cycle of magnetosomes in human stem cells: From degradation to biosynthesis of magnetic nanoparticles anew. ACS Nano. 14, 1406-1417

De Oliveira J, Chadili E, Piccini B, Turies C, Maillot-Maréchal E, Palluel O, Pardon P, Budzinski H, Cousin X, Brion F, Hinfray N. 2020. Refinement of an OECD test guideline for evaluating the effects of endocrinedisrupting chemicals on aromatase gene expression and reproduction using novel transgenic cyp19a1a-eGFP zebrafish. Aquat Toxicol. 220, 105403

Ducat A, Couderc B, Bouter A, Biquard L, Aouache R, Passet B, Doridot L, Cohen MB, Ribaux P, Apicella C, Gaillard I, Palfray S, Chen Y, Vargas A, Julé A, Frelin L, Cocquet J, San Martin CR, Jacques S, Busato F, Tost J, Méhats C, Laissue P, Vilotte JL, Miralles F, Vaiman D. 2020. Molecular mechanisms of trophoblast dysfunction mediated by imbalance between STOX1 isoforms. Science. 23, 101086

El Jabri M, Trossat P, Wolf V, Beuvier E, Rolet-Répécaud O, Gavoye S, Gaüzère Y, Belysheva O, Gaudillière N, Notz E, Grosperrin P, Laithier C, Delacroix-Buchet A. 2020. Mid-infrared spectrometry prediction of the cheese-making properties of raw Montbéliarde milks from herds and cheese dairy vats used for the production of Protected Designation of Origin and Protected Geographical Indication cheeses in Franche-Comté. J Dairy Sci. in press

Faggion S, Sanchez P, Vandeputte M, Clota F, Vergnet A, Blanc MO, Allal F. 2020. Evaluation of a European sea bass (Dicentrarchus labrax L.) post-larval tagging method with ultra-small RFID tags. Aquaculture. 520, 734945

Feron R, Zahm M, Cabau C, Klopp C, Roques C, Bouchez O, Eché C, Valiere S, Donnadieu C, Haffray P, Bestin A, Morvezen R, Acloque H, Euclide PT, Wen M, Jouanno E, Schartl M, Postlethwait JH, Schraidt C, Christie MR, Larson WA, Herpin A, Guiguen Y. 2020. Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens. Mol Ecol Resour. in press

Gehrke LJ, Capitan A, Scheper C, König S, Upadhyay M, Heidrich K, Russ I, Seichter D, Tetens J, Medugorac I,Thaller G. 2020. Are scurs in heterozygous polled (Pp) cattle a complex quantitative trait? Genet Sel Evol. 52, 6

Gervais L, Hewison AJM, Morellet N, Bernard M, Merlet J, Cargnelutti B, Chaval Y, Pujol B, Quéméré E. 2020. Pedigree-free quantitative genetic approach provides evidence for heritability of movement tactics in wild roe deer. J Evol Biol. in press

Griot R, Allal F, Brard‐Fudulea S, Morvezen R, Haffray P, Phocas F, Vandeputte M. 2020. APIS: An auto‐adaptive parentage inference software that tolerates missing parents. Mol Ecol Ressour. 20, 579-590

Hadadi E,Taylor W, Li X, Aslan Y, Villote M, Rivière J, Duvallet G, Auriau C, Dulong S, Raymond Letron I, Provot S, Bennaceur-Griscelliand AL, Acloque H. 2020. Chronic circadian disruption modulates breast cancer stemness and immune microenvironment to drive metastasis in mice. Nat Commun. 11, 3193

Hozé C, Escouflaire C, Mesbah-Uddin M, Barbat A, Boussaha M, Deloche MC, Boichard D, Fritz S, Capitan A. 2020. Short Communication: A splice site mutation in CENPU is associated with recessive embryonic lethality in Holstein cattle. J Dairy Sci. 103, 607-612

Hammer SE, Ho CH, Ando A, Rogel-Gaillard C, Charles M, Tector M, TectorAJ, Lunney JK. 2020. Importance of the major histocompatibility complex (Swine Leukocyte Antigen) in swine health and biomedical research. Annu Rev Anim Biosci. Ehead

Hulot A, Chiquet J, Jaffrezic F, Rigaill G. 2020. Fast tree aggregation for consensus hierarchical clustering. BMC Bioinformatics. 21, 120
Mastrangelo S, Ben Jemaa S, Ciani E, Sottile G, Moscarelli A, Boussaha M, Montedoro M, Pilla F, Cassandro M.2020. Genome-wide detection of signatures of selection in three Valdostana cattle populations. J Anim Breed Genet. early access.

Laoun A, Harkat S, Lafri M, Gaouar SBS, Belabdi I, Ciani E, De Groot M, Blanquet V, Leroy G, Rognon X, Da Silva A. 2020. Inference of breed structure in farm animals: Empirical comparison between SNP and microsatellite performance. Genes (Basel), 11 - pii: E57

Legarra A, Aguilar I, Colleau JJ. 2020. Methods to compute genomic inbreeding for ungenotyped individuals. J Dairy Sci. 103, in press

Lezmi G, Vibhushan S, Bevilaqua C, Crapart N, Cagnard N, Khen-Dunlop N, Boyle-Freyssaut C, Hadchouel A, Delacourt C. 2020. Congenital cystic adenomatoid malformations of the lung: an epithelial transcriptomic approach. Respir Res. 21, 43

Li JH, Zhong HZ,  Ramayo-Caldas Y, Terrapon N, Lombard V, Potocki-Veronese G, Estelle-Fabrellas J, Popova M, Yang ZY, Zhang H, Li F, Tang SM, Yang FM, Chen W, Chen B, Li JY,Guo J,  Martin C,Maguin E, Xu X. 2020. A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment. GigaScience. 9, 1-15

Lin JH, Masson E, Boulling A, Hayden M, Cooper DN, Férec C, Liao Z, Chen JM. 2020. 5 ' splice site GC > GT and GT > GC variants differ markedly in terms of their functionality and pathogenicity. Hum Mut. early view.

Liu A, Lund MS, Boichard D, Mao X, Karaman E, Fritz S, Pedersen Aamand G, Wang Y, Su G. 2020. Imputation for sequencing variants preselected to a customized low-density chip. Sci Rep. 10, 9524

Liu A, Lund MS, Boichard D, Karaman E, Fritz S, Aamand GP, Nielsen US, Wang Y, Su G. 2020. Improvement of genomic prediction by additional single nucleotide polymorphisms selected from whole genome sequencing data. Heredity. 124, 37-49

López-Colom P, Estellé J, Bonet J, Coma J, Martín-Orúe SM. 2020. Applicability of an unmedicated feeding program aimed to reduce the use of antimicrobials in nursery piglets: impact on performance and fecal microbiota. Animals (Basel). 10, pii: E242

Mach N, Ruet A, Clark A, Bars-Cortina D, Ramayo-Caldas Y, Crisci E, Pennarun S, Dhorne-Pollet S, Foury A, Moisan MP, Lansade L. 2020. Priming for welfare: gut microbiota is associated with equitation conditions and behavior in horse athletes. Sci Rep. 18, 8311.

Marthey S, Estellé J, Blin A, Wahlberg P, Créchet1 F, Lecardonnel J, Tessiot F, Rogel‑Gaillard C,  Bourneuf E. 2020. Transcription from a gene desert in a melanoma porcine model. Mol Genet Genomics, online first.   

Massacci FR, Morelli A, Cucco L, Castinel A, Ortenzi R, Tofani S, Pezzotti G, Estelle J, Paniccia M, Magistrali CF. 2020. Transport to the slaughterhouse affects the Salmonella shedding and modifies the fecal microbiota of finishing pigs. Animals (Basel). 10, 676

Massacci FR, Berri EM, Lemonnier G, Guettier E, Blanc F, Jardet D, Rossignol MN, Mercat MJ, Dore J, Lepage P, Rogel Gaillard C, Estelle J. 2020. Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets. Animal Microbiome. 2, 2

Massacci FR, Clark A, Ruet A, Lansade L, Costa M, Mach N. 2019. Inter-breed diversity and temporal dynamics of the faecal microbiota in healthy horses. J Anim Breed Genet. 137, 103-120

Massacci FR, Tofani S, Forte C, Bertocchi M, Lovito C, Orsini S, Tentellini M, Marchi L, Lemonnier G, Luise D, Blanc F, Castinel A Bevilacqua C, Rogel-Gaillard C, Pezzotti G, Estellé J, Trevisi P2, Magistrali CF. 2020. Host genotype and amoxicillin administration affect the incidence of diarrhoea and faecal microbiota of weaned piglets during a natural multiresistant ETEC infection. J Anim Breed Genet. 137, 60-72

Miranda G, Bianchi L, Krupova Z, Trossat P, Martin P. 2020. An improved LC-MS method to profile molecular diversity and quantify the six main bovine milk proteins, including genetic and splicing variants as well as post-translationally modified isoforms. Food Chem X. 5, 100080 

Moroldo M, Munyaka PM, Lecardonnel J, Lemonnier G, Venturi E, Chevaleyre C, Oswald IP, Estellé J, Rogel-Gaillard C. 2020. Integrative analysis of blood and gut microbiota data suggests a non-alcoholic fatty liver disease (NAFLD)-related disorder in French SLAdd minipigs. Sci Rep. 10, 234

Morris KM, Hindle MM, Boitard S, Burt DW, Danner AF, Eory L, Forrest HL, Gourichon D, Gros J, Hillier LW, Jaffredo T, Khoury H, Lansford R, Leterrier C, Loudon A, Mason AS, Meddle SL, Minvielle F, Minx P, Pitel F, Seiler JP, Shimmura T, Tomlinson C, Vignal A, Webster RG, Yoshimura T, Warren WC, Smith J. 2020. The quail genome: insights into social behaviour, seasonal biology and infectious disease response. BMC Biol, 18-14

Nayeri S, Schenkel FS, Martin P, Fleming A, Jamrozik J, Malchiodi F, Brito LF, Baes CF, Sargolzaei M, Miglior F. 2020. Estimation of genetic parameters for mid-infrared-predicted lactoferrin and milk fat globule size in Holstein cattle. J Dairy Dci. 103, 2487–2497

Neou M, Villa C, Armignacco R, Jouinot A, Raffin-Sanson ML, Septier A, Letourneur F, Diry S, Diedisheim M, Izac B, Gaspar C, Perlemoine K, Verjus V, Bernier M, Boulin A, Emile JF, Bertagna X, Jaffrezic F, Laloe D, Baussart B, Bertherat J, Gaillard S, Assié G. 2020. Pangenomic classification of pituitary neuroendocrine Tumors. Cancer Cell. 37, 1-12

Noyer M, Reoyo-Prats B, Aubert D, Bernard M, Verneau O, Palacios C. 2020. Particle-attached riverine bacteriome shifts in a pollutant-resistant and pathogenic community during a Mediterranean extreme storm event. Sci Total Environ. 732, 139047

Passet B, Castille J, Makhzami S, Truchet S, Vaiman A, Floriot S,  Moazami-Goudarzi K, Vilotte M, Gaillard AL, Helary L, Bertaud M, Andréoletti O, Vaiman D, Calvel P, Daniel-Carlier N, Moudjou M, Beauvallet C, Benharouga M, Laloë D, Mouillet-Richard S, Duchesne A, Béringue V, Vilotte JL. 2020. The Prion-like protein Shadoo is involved in mouse embryonic and mammary development and differentiation. Sci Rep, 10-6765

Pegram CL, Bonnett BN, Skarp H, Arnott G, James H, Hedhammar A, Leroy G, Llewellyn-Zaidi A, Seath IJ, O’Neill DG. 2020. Moving from information and collaboration to action: report from the 4th international dog health workshop, Windsor in May 2019. Canine Med Genet. 7, 4

Prchal M, Kocour M, Vandeputte M, Kause A, Vergnet A,Zhao J, Gela D, Kašpar V, Genestout L, Bestin A, Haffray P, Bugeon J. 2020. Morphological predictors of slaughter yields using 3D digitizer and their use in a common carp breeding program. Aquaculture. 520, 734993

Ramayo-Caldas Y, Zingaretti L, Popova M, Estelle J, Bernard A, Pons N, Bellot P, Mach N, Rau A, Roume H, Perez-Enciso M, Faverdin P, Edouard N, Ehrlich D, Morgavi DP, Renand G. 2020. Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows. J Anim Breed Genet. 137, 49-59

Randazzo P Anba-Mondoloni J, Aubert-Frambourg A, Guillot A, Pechoux C, Vidic J, Auger S. 2020. Bacillus subtilis egulators MntR and Zur participate in redox cycling, antibiotic sensitivity, and cell wall plasticity. J Bacteriol. 202, e00547-19

Ricard A, Dumont Saint Priest B, Danvy S, Barrey E. 2020. Accelerometers provide early genetic selection criteria for jumping horses. Front Genet. in press

Rodde C, Chatain B, Vandeputte M, Trinh TQ, Benzie JAH, de Verdal H. 2020. Can individual feed conversion ratio at commercial size be predicted from juvenile performance in individually reared Nile tilapia Oreochromis niloticus? Aquacult Rep. 17, 100349

Ruet A, Arnould C,  Levray J, Lemarchand J, Mach N, Moisan MP, Foury A, Briant C, Lansade L. 2020. Effects of a temporary period on pasture on the welfare state of horses housed in individual boxes. Appl Anim Behav Sci. 228, 105027

Sanchez MP, Guatteo R, Davergne A, Saout J, Grohs C, Deloche MC, Taussat S, Fritz S, Boussaha M, Blanquefort P, Delafosse A, Joly A, Schibler L, Fourichon C, Boichard D. 2020. Identification of the ABCC4, IER3, and CBFA2T2 candidate genes for resistance to paratuberculosis from sequence‑based GWAS in Holstein and Normande dairy cattle. Genet Sel Evol. 52, 14.

Sellem E, Marthey S, Rau A, Jouneau L, Bonnet A, Perrier JP, Fritz S, Le Danvic C, Boussaha M, Kiefer H, Jammes H, Schibler L. 2020. A comprehensive overview of bull sperm‑borne small non‑coding RNAs and their diversity across breeds. Epigenetics Chromatin. 13, 19 

Tixier-Boichard M. 2020. From the jungle fowl to highly performing chickens: are we reaching limits? World Poult Sci J. in press.

Tramontin Grau E, Charles M, Féménia  M, Rebours E, Vaiman A, Rocha D. 2020. Survey of mitochondrial sequences integrated into the bovine nuclear genome. Sci Rep. 10, 2077

Vandeputte M, Fraslin C, Haffray P, Bestin A, Allal F, Kocour M, Prchal M, Dupont-Nivet M. 2020. How to genetically increase fillet yield in fish: Relevant genetic parameters and methods to predict genetic gain. Aquaculture. 519, 737-877  

Van der Kolk JH, Thomas S, Mach N, Ramseyer A, Burger D, Gerber V, Nuoffer JM. 2020. Serum acylcarnitine profile in endurance horses with and without metabolic dysfunction. Vet J. 255, 105419

Vitorino Carvalho A, Hennequet-Antier C, Crochet S, Bordeau T, Couroussé N, Cailleau-Audouin E, Chartrin P, Darras VM, Zerjal T, Collin A, Coustham V. 2020. Embryonic thermal manipulation has short and long-term effects on the development and the physiology of the Japanese quail. PLoS One. 15, e0227700

Wu X, Mesbah-Uddin M, Guldbrandtsen B, Lund MS, Sahana G. 2020. Novel haplotypes responsible for prenatal death in Nordic Red and Danish Jersey cattle. J Dairy Sci. 103, 4570-4578

Zhao J, Prchal M, Palaiokostas C, Houston RD, Kause A, Vandeputte M, Vergnet A, Bugeon J, Bestin A, Veselý T, Pokorová D, Piačková V, Pojezdal L, Genestout L, Gela D, Kroupová HK, Kocour M. 2020. Genetic relationship between koi herpesvirus disease resistance and production traits inferred from sibling performance in Amur mirror carp. Aquacultur. 520, 73498

Zingaretti LM, Renand G, Morgavi DP, Ramayo-Caldas Y. 2020. Link-HD: a versatile framework to explore and integrate heterogeneous microbial communities. Bioinformatics. in press

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