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24, chemin de Borde Rouge -Auzeville - CS52627 31326 Castanet Tolosan cedex - France

Last update: May 2021

Menu Logo Principal AgroParisTech Université Paris-Saclay


GABI : Génétique Animale et Biologie IntégrativeUnité Mixte de Recherche INRA - AgroParisTech


Our publications

Recent publications

Bernard M, Dehaullon A, Gao G, Paul K, Lagarde H, Charles M, Prchal M, Danon J, Jaffrelo L, Poncet C, Patrice P, Haffray P, Quillet E, Dupont-Nivet M, Palti Y, Lallias D, Phocas F. 2022. Development of a High-Density 665 K SNP Array for Rainbow Trout Genome-Wide Genotyping. Front Genetics  GenAqua, GiBBS
Bes A, Noziere P, Renand G, Rochette Y, Guarnido-Lopez P, Cantalapiedra-Hijar G, Martin C. 2022. Individual methane emissions (and other gas flows) are repeatable and their relationships with feed efficiency are similar across two contrasting diets in growing bulls. Animal G2B
Malsa J, Courtot E, Boisseau M, Dumont B, Gombault P, Kuzmina TA, Basiaga M, Lluch J, Annonay G, Dhorne-Pollet S, Mach N, Sutra JF, Wimel L, Dubois C, Guégnard F, Serreau D, Lespine A, Sallé G, Fleurance G. 2022. Effect of sainfoin (Onobrychis viciifolia) on cyathostomin eggs excretion, larval development, larval community structure and efficacy of ivermectin treatment in horses. Parasitology.  BIGE
Mazurier M, Drouaud J, Bahrman N, Rau A, Lejeune-Henaut I, Delbreil B, Legrand S. 2022. Integrated sRNA-seq and RNA-seq Analyses Reveal a microRNA Regulation Network Involved in Cold Response in Pisum sativum L. Genes GiBBS
Pereira G, Guo YZ, Silva E, Silva MF, Bevilacqua C, Charpigny G, Lopes-da-Costa L, Humblot P. 2022. Subclinical endometritis differentially affects the transcriptomic profiles of endometrial glandular, luminal, and stromal cells of postpartum dairy cows. J. Dairy Sci Pltf
Restoux G, Rognon X, Vieaud A, Guemene D, Petitjean F, Rouger R, Brard‑Fudulea S, Lubac‑Paye S, Chiron G, Tixier‑Boichard M. 2022. Managing genetic diversity in breeding programs of small populations: the case of French local chicken breeds. Gen Sel Evol GiBBS
Senczuk G, Criscione A, Mastrangelo S, Biscarini F, Marletta D, Pilla F, Laloë D, Ciampolini R. 2022. How Geography and Climate Shaped the Genomic Diversity of Italian Local Cattle and Sheep Breeds. Animals. GiBBS


Al Adhami H, Bardet AF, Dumas M, Cleroux E, Guibert S, Fauque P, Acloque H, Weber M. 2022. A comparative methylome analysis reveals conservation and divergence of DNA methylation patterns and functions in vertebrates. BMC Biol. 

Auclair-Ronzaud J, Jaffrézic F, Wimel L, Dubois C, Laloë D, Chavatte-Palmer P. 2022. Estimation of milk production in suckling mares and factors influencing their milk yield. Animal. 

Bars-Cortina D, Sakhawat AL, Pinol-Felis C, Motilva MJ. 2022. Chemopreventive effects of anthocyanins on colorectal and breast cancer: A review. SEM CANCER BIOL. 

Bedere N, Berghof TVL, Peeters K, Pinard-Van der Laan MH, Visscher J, David I, Mulder HA. 2022. Using egg production longitudinal recording to study the genetic background of resilience in purebred and crossbred laying hens. Gen Sel Evol. 

Bertho S, Herpin A, Jouanno E, Yano A, Bobe J, Parrinello H, Journot L, Guyomard R, Muller T, Swanson P, McKinney G, Williamson K, Meek M, Schartl M, Guiguen Y. 2022. A nonfunctional copy of the salmonid sex-determining gene (sdY) is responsible for the apparent XY females in Chinook salmon, Oncorhynchus tshawytscha. G3. 

Besson M, Rombout N, Salou G, Vergnet A, Cariou S, Bruant JS, Izquierdo M, Bestin A, Clota F, Haffray P, Allal F, Vandeputte M. 2022. Potential for genomic selection on feed efficiency in gilthead sea bream (Sparus aurata), based on individual feed conversion ratio, carcass and lipid traits. AQUACULTURE REPORTS. 

Borey M, Bed’Hom B, Bruneau N, Estellé J, Larsen F, Blanc F, Pinard-van der Laan M-H, Dalgaard T, Calenge F. 2022. Caecal microbiota composition of experimental inbred MHC-B lines infected with IBV differs according to genetics and vaccination. Scientific report 

Cazals A, Estelle J, Bruneau N, Coville JL, Menanteau P, Rossignol MN, Jardet D, Bevilacqua C, Rau A, Bed'Hom B, Velge P, Calenge F. 2022. Differences in caecal microbiota composition and Salmonella carriage between experimentally infected inbred lines of chickens. Gen Sel Evol.

Cerutti C, Leroux S, Gourichon D, Labrune Y, David I, Zerjal T, Coustham V, Devailly G, Pitel F. 2022. Effects of in-ovo injection of endocrine disruptors and methyltransferase inhibitor on quail growth and egg-laying performances. Animal. 

Chebrout M, Kone MC, Jan HU, Cournut M, Letheule M, Fleurot R, Aguirre-Lavin T, Peynot N, Jouneau A, Beaujean N, Bonnet-Garnier A. 2022. Transcription of rRNA in early mouse embryos promotes chromatin reorganization and expression of major satellite repeats. J CELL SCIENCE.

Costes V, Chaulot-Talmon A, Sellem E, Perrier JP, Aubert-Frambourg A, Jouneau L, Pontlevoy C, Hozé C, Fritz S, Boussaha M, Le Danvic C, Sanchez MP, Boichard D, Schibler L, Jammes H, Jaffrézic F, Kiefer H. 2022. Predicting male fertility from the sperm methylome: application to 120 bulls with hundreds of artificial insemination records. Clinical Epigenetics. 

Curcio A, van de Walle A, Pechoux C, Abou-Hassan A, Wilhelm C. 2022. In Vivo Assimilation of CuS, Iron Oxide and Iron Oxide@CuS Nanoparticles in Mice: A 6-Month Follow-Up Study. PHARMACEUTICS. 

David I, Ricard A, Huynh-Tran VH, Dekkers JCM, Gilbert H. 2022. Quality of breeding value predictions from longitudinal analyses, with application to residual feed intake in pigs. Gen Sel Evol.

de Verdal H, Haffray P, Douchet V, Vandeputte M. Impact of a divergent selective breeding programme on individual feed conversion ratio in Nile tilapia Oreochromis niloticus measured in groups by video-recording. Aquaculture

De Wolf J, Glorion M, Jouneau L, Estephan J, Leplat JJ, Blanc F, Richard C, Urien C, Roux A, Le Guen M, Journois D, Schwartz-Cornil I, Sage E. 2022. Challenging the Ex Vivo Lung Perfusion Procedure With Continuous Dialysis in a Pig Model. TRANSPLANTATION 

Druml T, Brem G, Horna M, Ricard A, Grilz-Seger G. DPF3, A Putative Candidate Gene For Melanoma Etiopathogenesis in Gray Horses. JEVS. 

Duclos R, Delanoue E, Dockes AC, Journaux L, Sourdioux M, Bidanel JP. 2022. Targeted genome modification applied to animals: in between controversies. INRA PROD ANIM. 

Ducrocq V, Cadet A, Patry C, van der Westhuizen L, van Wyk JB, Neser FWC. 2022. Two approaches to account for genotype-by-environment interactions for production traits and age at first calving in South African Holstein cattle. Gen Sel Evol. 

Faulconnier Y, Boby C, Coulpier F, Lemoine S, Martin P, Leroux C. 2022. Comparative transcriptome analysis of goat (Capra hircus) adipose tissue reveals physiological regulation of body reserve recovery after the peak of lactation. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. 

Floriot S, Bellutti L, Castille J, Moison P, Messiaen S, Passet B, Boulanger L, Boukadiri A, Tourpin S, Beauvallet C, Vilotte M, Riviere J, Pechoux C, Bertaud M, Vilotte JL, Livera G. 2022. CEP250 is Required for Maintaining Centrosome Cohesion in the Germline and Fertility in Male Mice. Front Cell Dev. 

Gascuel-Odoux C, Lescourret F, Dedieu B, Detang-Dessendre C, Faverdin P, Hazard L, Litrico-Chiarelli I, Petit S, Roques L, Reboud X, Tixier-Boichard M, de Vries H, Caquet T. 2022. A research agenda for scaling up agroecology in European countries. AGRONOMY FOR SUSTAINABLE DEVELOPMENT. 

Grohs C, Boussaha M, Hozé C, Capitan A. 2022. Rare cases of hernia of the linea alba among TWIST1 haploinsufficient Charolais cattle. Anim Genet

Hauser M, Signer-Hasler H, Kuettel L, Capitan A, Guldbrandtsen B, Hinrichs D, Flury C, Seefried FR, Droegemueller C. 2022. Identification of two new recessive MC1R alleles in red-coloured Evolener cattle and other breeds. Anim Genet. 

Lesueur J, Walachowski S, Barbey S, Cebron N, Lefebvre R, Launay F, Boichard D, Germon P, Corbiere F, Foucras G. 2022. Standardized whole blood assay and bead-based cytokine profiling reveal commonalities and diversity of the response to bacteria and TLR ligands in cattle. Front. Immunol. 

Mage RJ, Rogel-Gaillard C. 2022. Immunogenetics in the rabbit. The genetics and genomics of the rabbit. Book, Chap. 5 

Magnier J, Druet T, Naves M, Ouvrard M, Raoul S, Janelle J, Moazami-Goudarzi K, Lesnoff M, Tillard E, Gautier M, Flori L. 2022. The genetic history of Mayotte and Madagascar cattle breeds mirrors the complex pattern of human exchanges in Western Indian Ocean. G3.

Marandel L, Heraud C, Veron V, Laithier J, Marchand M, Quillet E, Callet T, Dupont-Nivet M, Medale F. 2022. A plant-based diet differentially affects the global hepatic methylome in rainbow trout depending on genetic background. EPIGENETICS

Pereira G, Guo YZ, Silva E, Bevilacqua C, Charpigny G, Lopes-da-Costa L, Humblot P. 2022. Progesterone differentially affects the transcriptomic profiles of cow endometrial cell types. BMC Genomics. 

Prado E, Eklouh-Molinier C, Enez F, Causeur D, Blay C, Dupont-Nivet M, Labbe L, Petit V, Moreac A, Taupier G, Haffray P, Bugeon J, Corraze G, Nazabal V. 2022. Prediction of fatty acids composition in the rainbow trout Oncorhynchus mykiss by using Raman micro-spectroscopy. Analytica Chimica Acta. 

Rau A, Manansala R, Flister MJ, Rui H, Jaffrezic F, Laloe D, Auer PL. 2022. Individualized multi-omic pathway deviation scores using multiple factor analysis. BIOSTATISTICS. 

Rau A, Passet B, Castille J, Daniel-Carlier N, Asset A, Lecardonnel J, Moroldo M, Jaffrézic F, Laloë D, Moazami-Goudarzi K, Vilotte JL. 2022. Potential genetic robustness of Prnp and Sprn double knockout mouse embryos towards ShRNA-lentiviral inoculation. Vet Res. 

Rejasse A, Waeytens J, Deniset-Besseau A, Crapart N, Nielsen-Leroux C, Sandt C. 2022. Plastic biodegradation: Do Galleria mellonella Larvae Bioassimilate Polyethylene? A Spectral Histology Approach Using Isotopic Labeling and Infrared Microspectroscopy Env Sci Tech. 

Rohmer T, Ricard A, David I. 2022. Copula miss-specification in REML multivariate genetic animal model estimation. Gen Sel Evol. 

Sanchez MP, Tribout T, Fritz S, Wolf V, Laithier C, Brochard M, Boichard D. 2022. Opportunities for genomic selection of cheese-making traits in Montbéliarde cows. J. Dairy Sci.

Verma M, Laloe D, Dige MS, De S, Rout PK. 2022. Landscape and bioclimatic diversity of milk protein variability in tropical goats. Small Ruminant Research

Verrier E, Ducos A. 2022. Aspects génétiques de l’évolution de l’élevage : une histoire de temps, de moyens et d’organisation sociale. Bulletin de l’Académie Vétérinaire de France.

Wragg D, Eynard SE, Basso B, Canale-Tabet K, Labarthe E, Bouchez O, Bienefeld K, Bienkowska M, Costa C, Gregorc A, Kryger P, Parejo M, Pinto MA, Bidanel JP, Servin B, Le Conte Y, Vignal A. 2022. Complex population structure and haplotype patterns in the Western European honey bee from sequencing a large panel of haploid drones. Mol Eco Res 

Xiang R, Fang L, Sanchez MP, Cheng H, Zhang Z. 2022. Multi-layered Genome-wide Association and Prediction in Animals. Frontiers in Genetics.