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INRA
24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018

Menu Logo Principal AgroParisTech Université Paris-Saclay

INRA GABI Unit

GABI : Génétique Animale et Biologie IntégrativeUnité Mixte de Recherche INRA - AgroParisTech

Publications

Our publications

Recent publications

Ben Braiek M, Fabre S, Hoze C, Astruc JM, Moreno-Romieux C. 2021. Identification of homozygous haplotypes carrying putative recessive lethal mutations compromising fertility traits in French Lacaune dairy sheep. Genet Sel Evol. 53, 41. G2B

Ben-Jemaa S, Senczuk G, Ciani E, Ciampolini R, Catillo G, Boussaha M, Pilla F, Portolano B, Mastrangelo S. 2021. Genome-wide analysis reveals selection signatures involved in meat traits and local adaptation in semi-feral Maremmana cattle. Front Genet. 12, 675569 G2B        

Faggion S, Vandeputte M, Vergnet A, Clota F, Blanc M-O, Sanchez P, Ruelle F, Allal F. 2021. Sex dimorphism in European sea bass (Dicentrarchus labrax L.): New insights into sex-related growth patterns during very early life stages. PlosOne GenAqua

Lu J, Le Hir R, Gomez-Paez D-M, Coen O, Pechoux C, Jasinski S, Magnani E. 2021. The nucellus: between cell elimination and sugar transport. Plant Physiol. 185, 478-490 PF

Publications 2021

Allais-Bonnet A., Hintermann A., Deloche M.C., Cornette R., Bardou P., Naval-Sanchez M., Pinton A., Haruda A., Grohs C., Zakany J., Bigi D., Medugorac I., Putelat O., Greyvenstein O., Hadfield T., Ben Jemaa S., Bunevski G., Menzi F., Hirter N., Paris J.M., Hedges J., Palhiere I., Rupp R., Lenstra J.A., Gidney L., Lesur J., Schafberg R., Stache M., Wandhammer M.D., Arbogast R.M., Guintard C., Blin A., Boukadiri A., Rivière J., Esquerré D., Donnadieu C., Danchin-Burge C., Reich C.M., Riley D.G., van Marle-Koster E., Cockett N., Hayes B.J., Drögemüller C., Kijas J., Pailhoux E., Tosser-Klopp G., Duboule D., Capitan A. 2021. Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae. Molecular Biology and Evolution, msab021

Barsoe S, Allal F, Vergnet A, Vandeputte M, Olesen NJ, Schmidt JG, Larsen CA, Cuenca A, Vendramin N. 2021. Different survival of three populations of European sea bass (Dicentrarchus labrax) following challenge with two variants of nervous necrosis virus (NNV). Aquaculture Report. 19.

Beaumont M, Blanc F, Cherbuy C, Egidy G, Giufra E, Lacroix‑Lamandé S, Wiedemann A. 2021. Intestinal organoids in farm animals. Vet Res. 52, 33

Ben Abdelkrim A, Puillet L, Gomes P, Martin O. 2021. Lactation curve model with explicit representation of perturbations as a phenotyping tool for dairy livestock precision farming. Animal. 15, 100074

Ben Abdelkrim A, Tribout T, Martin O, Boichard D, Ducrocq V, Friggens NC. 2021. Exploring simultaneous perturbation profiles in milk yield and body weight reveals a diversity of animal responses and new opportunities to identify resilience proxies. J Dairy Sci. 104, 459-470

Bérodier M, Berg P, Meuwissen T, Boichard D, Brochard M,  Ducrocq V. 2021. Improved dairy cattle mating plans at herd level using genomic information. Animal. 15, 10016

Bestin A, Brunel O, Malledant A, Debeuf B, Benoit P, Mahla R, Chapuis H, Guémené D, Vandeputte M, Haffray P.  2021. Genetic parameters of caviar yield, color, size and firmness using parentage assignment in an octoploid fish species, the Siberian sturgeon Acipenser baerii. Aquacul. 540, 736725.

Blanc F,  Maroilley T,  Revilla M, Lemonnier G, Leplat JJ,  Billon Y, Ravon L, Bouchez O, Bidanel JP, Bed’Hom B, Pinard‑van der Laan MH, Estellé J, Rogel‑Gaillard C. 2021. Influence of genetics and the pre-vaccination blood transcriptome on the variability of antibody levels after vaccination against Mycoplasma hyopneumoniae in pigs. Genet Sel Evol. 53, 24

Blanc M, Alfonso S, Begout ML, Barrachina C, Hyotylainen T, Keiter SH, Cousin X. 2021. An environmentally relevant mixture of polychlorinated biphenyls (PCBs) and polybrominated diphenylethers (PBDEs) disrupts mitochondrial function, lipid metabolism and neurotransmission in the brain of exposed zebrafish and their unexposed F2 offspring. Sci Total Environ. 754, 142097

Blay C, Haffray P,Bugeon J, D’Ambrosio J, Dechamp N, Collewet G, Enez F, Petit V, Cousin X, Corraze G, Phocas F, Dupont-Nivet M. 2021. Genetic Parameters and Genome-Wide Association Studies of Quality Traits Characterised Using Imaging Technologies in Rainbow Trout, Oncorhynchus mykiss’. Front Genet. 12, 639223

Boitard S, Paris C, Sevane N, Servin B, Bazi-Kabbaj K, Dunner S. 2021. Gene Banks as Reservoirs to Detect Recent Selection: The Example of the Asturiana de los Valles Bovine Breed. Front Genet. 12, 575405

Boufroura FZ, Tomkiewicz‑Raulet C, Poindessous V, Castille J, Vilotte JL,  Bastin J, Mouillet‑Richard S, Djouadi F. 2021. Cellular prion protein dysfunction in a prototypical inherited metabolic myopathy. Cell Mol Life Sci. ahead of print.

Castille J, Passet B, Makhzami S, Vilotte M, Moazami-Goudarzi K, Truchet S, Daniel-Carlier N, Gaillard AL, Andréoletti O, Vaiman D, Beauvallet C, Vaiman A, Floriot S, Calvel P, Mouillet-Richard S, Duchesne A, Béringue V, Vilotte JL. 2021. Co-invalidation of Prnp and Sprn in FVB/N mice affects reproductive performances and highlight complex biological relationship between PrP and Shadoo. Biochem Biophys Res Commun. 551.

Cormier B, Gambardella C, Tato T, Perdriat Q, Costa E, Veclin C, Le Bihanic F, Grassl B, Dubocq, Karrman A, Van Arkel K,  Lemoine S, Lagarde F, Morin B, Garaventa F, Faimali M, Cousin X, Begout ML, Beiras R, Cachot J. 2021. Chemicals sorbed to environmental microplastics are toxic to early life stages of aquatic organisms. Ecotoxicol Environ Saf. 208, 111665

Cormier B, Le Bihanic F, Cabar M, Crebassa JC, Blanc M, Larsson M, Dubocq F, Yeung L, Clérandeau C, Keiter SH, Cachot J, Bégout ML, Cousin X. 2021. Chronic feeding exposure to virgin and spiked microplastics disrupts essential biological functions in teleost fish. J Haz Mat. 125626

Davaine C, Hadadi E, Taylor W, Bennaceur-Griscelli A, Acloque H. 2021. Inducing Sequential Cycles of Epithelial-Mesenchymal and Mesenchymal-Epithelial Transitions in Mammary Epithelial Cells. Methods Mol Biol. 2179, 341-351

David GM, López-García P, Moreira D, Alric B, Deschamps P, Bertolino P, Restoux G, Rochelle-Newall E, Thébault E, Simon M, Jardillier L. 2021.  Small freshwater ecosystems with dissimilar microbial communities exhibit similar temporal patterns. Mol Ecol. 11.

De Oliveira J, Chadili E, Turies C, Brion F, Cousin X, Hinfray N. 2021. A comparison of behavioral and reproductive parameters between wild-type, transgenic and mutant zebrafish: Could they all be considered the same "zebrafish" for reglementary assays on endocrine disruption? Comp Biochem Physiol C Toxicol Pharmacol. 239, 108879

Destoumieux-Garzón D, Bonnet P, Teplitsky C, Criscuolo F, Henry PY, Mazurais D, Prunet P, Salvat G, Usseglio-Polatera P, Verrier E, Friggens N. 2021. OneARK: Strengthening the links between animal production science and animal ecology. Animal, 15: 100053

DeVogel N, Auer PL,  Manansala R, Rau A, Wang T. 2021. A unified linear mixed model for familial relatedness and population structure in genetic association studies. Genet Epidemiol. in press

Dugué M, Dumont Saint Priest B, Crichan H, Danvy S, Ricard A. 2021. Genomic correlations between the gaits of young horses measured by accelerometry and functional longevity in jumping competition. Front Genet. 12, 619947

Floriot S, Duchesne D, Grohs C, Hozé C, Deloche MC, Fayolle G, Vilotte JL, Boichard D, Fritz S,  Boussaha M. 2021. A missense mutation in the FZD7 gene is associated with dilution of the red areas of the coat in Montbéliarde cattle. Anim Genet. 52, 351-355

Griot R, Allal F, Phocas F, Brard-Fudulea S, Morvezen R, Bestin A, Haffray P, François Y, Morin T, Poncet C, Vergnet A, Cariou S, Brunier J, Bruant JS, Peyrou B, Gagnaire PA, Vandeputte M. 2021. Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip. Aquaculture. 530, 735930

Hadadi E, Acloque H. 2021. Role of circadian rhythm disorders on EMT and tumour-immune interactions in endocrine-related cancers. Endocr Relat Cancer. 28, R67-R80

Hue-Beauvais C, Faulconnier Y, Charlier M, Leroux C. 2021. Nutritional Regulation of Mammary Gland Development and Milk Synthesis in Animal Models and Dairy Species. Genes. 12, 523

Ivanova E, Le Guillou S, Hue-Beauvais C, Le Provost F. 2021. Epigenetics: New Insights into Mammary Gland Biology. Genes. 12, 231

Lallias D, Bernard M, Ciobotaru C, Dechamp N, Labbé L, Goardon L, Le Calvez JM, Bideau M,Fricot A, Prézelin A, Charles M, Moroldo M, Cousin X, Bouchez O, Roulet A, Quillet E,  Dupont-Nivet M. 2021. Sources of variation of DNA methylation in rainbow trout: combined effects of temperature and genetic background. Epigenetics. in press.

Lefebvre R, Larroque H, Barbey S, Gallard Y, Colleau JJ, Lainé AL, Boichard D, Martin P. 2021. Genome-wide association study for age at puberty and resumption of cyclicity in a crossbred dairy cattle population. J. Dairy Sci. 104, 104, 5794-5804

Leroy G, Verrier E. 2021. Contribution des ressources génétiques animales aux services écosystémiques liés au développement territorial. Essais. 6, 79-87

Mach N, Lansade L, Bars‑Cortina D ,Dhorne‑Pollet S, Foury A, Moisan MP, Ruet A. 2021. Gut microbiota resilience in horse athletes following holidays out to pasture. Sci Rep. 11, 5007

Mach N, Moroldo M, Rau A, Lecardonnel J, Le Moyec L, Robert C, Barrey E. 2021. Understanding the Holobiont: Crosstalk Between Gut Microbiota and Mitochondria During Long Exercise in Horse. Front. Mol. Biosci.  8, 656204

Mariadassou M, Suez M, Sathyakumar S, Vignal A, Arca M, Nicolas P, Faraut T, Esquerré D, Nishibori M, Vieaud A, Chen CF, Manh Pham H, Roman Y, Hospital F, Zerjal T, Rognon X, Tixier-Boichard M. 2021. Unraveling the history of the genus Gallus through whole genome sequencing. Mol Phylogenet Evol. 158, 107044

Martin P, Ducrocq V, Faverdin P, Friggens NC. 2021. Disentangling residual feed intake—Insights and approaches to make it more fit for purpose in the modern context. J Dairy Sci. 104

Martin P, Ducrocq V, Gordo DGM, Friggens NC. 2021. A new method to estimate residual feed intake in dairy cattle using time series data. Animal, 15, 100101

Martin P, Vinet A, Denis C, Grohs C, Chanteloup L, Dozias D, Maupetit D, Sapa J, Renand G, Blanc F. 2021. Determination of immunoglobulin concentrations and genetic parameters for colostrum and calf serum in Charolais animals. J Dairy Sci. 104, 3240–3249

Niel R, Le Moyec L, Launay T, Mille-Hamard L, Triba MN, Maciejak O, Billat VL, Momken I. 2021. Physical performance level in sarcomeric mitochondria creatine kinase knockout mouse model throughout ageing. Exp Gerontol. 46, 111246

Pan Q, Feron R, Jouanno E, Darras H, Herpin A, Koop B, Rondeau E, Goetz FW, Larson WA, Bernatchez L, Tringali M, Curran SS, Saillant E, Denys GPJ, von Hippel FA, Chen S, Lopez JA, Verreycken H, Ocalewicz K, Guyomard R, Eche C, Lluch J, Roques C, Hu H, Tabor R, DeHaan P, Nichols KM, Journot L, Parrinello H, Klopp C, Interesova EA, Trifonov V, Schartl M, Postlethwait J, Guiguen Y. 2021. The rise and fall of the ancient northern pike master sex-determining gene. eLife. 10, e62858

Puillet L, Ducrocq V, Friggens NC, Amer PR. 2021. Exploring underlying drivers of genotype by environment interactions in feed efficiency traits for dairy cattle with a mechanistic model involving energy acquisition and allocation. J Dairy Sci. 24: 5805-5816

Ramírez‑Ayala LC, Rocha D, Ramos‑Onsins SE, Leno‑Colorado J, Charles M, Bouchez O, Rodríguez‑Valera Y, Pérez‑Enciso, M, Ramayo‑Caldas Y. 2021. Whole‑genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions. Genet Sel Evol. 53, 3

Rau A, Manansala R, Flister MJ, Rui H, Jaffrézzic F, Laloë D, Auer PL. 2021. Individualized multi-omic pathway deviation scores using multiple factor analysis. Biostatistics. in press.

Ricard A, Duluard A. 2021. Genomic analysis of gaits and racing performance of the French trotter. J Anim Breed Genet. early access

Sanchez MP, Rocha D, Charles M, Boussaha M, Hozé C, Brochard M, Delacroix-Buchet A, Grosperrin P, Boichard D. 2021. Sequence-based GWAS and post-GWAS analyses reveal a key role of SLC37A1 and ANKH genes and gene regulatory regions on bovine milk minerals. Sci Rep. 11, 7537

Silva RD, Gardyn OC, Hiemstra SJ, Marques JGO, Tixier-Boichard M, Moran, D. 2021. Rationalizing ex situ collection of reproductive materials for endangered livestock breed conservation. Ecol Econ. 181, 106916

Vandeputte M, Bestin A, Fauchet L, Allamellou JM, Bosc S, Menchi o, Haffray P. 2021. Can we identify wild-born salmon from parentage assignment data? A case study in the Garonne-Dordogne rivers salmon restoration programme in France. Aquat Living Resour.

Verrier E, Markey L, Lauvie A. 2021. Valorisation des races animales locales par des produits liés à leur territoire : cinq leçons tirées de cas variés en France. Essais. 6, 35-45

Vinet A, Bouyer C, Forestier L, Oulmouden A, Blanquet V, Picard B, Cassar-Malek I, Bonnet M, Rocha D, Renand G. 2021. The Blonde d’Aquitaine T3811>G3811 mutation in the myostatin gene: association with growth, carcass, and muscle phenotypes in veal calves. J Anim Sci. 99, skab039