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24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018

Menu Logo Principal AgroParisTech Université Paris-Saclay


GABI : Génétique Animale et Biologie IntégrativeUnité Mixte de Recherche INRA - AgroParisTech

2016 publications

Allais-Bonnet A, Castille J, Pannetier M, Passet B, Elzaiat M, Andre M, Montazer-Torbati F, Moazami-Goudarzi K, Vilotte JL, Pailhoux E. 2016. A specific role for PRND in goat foetal Leydig cells is suggested by prion family gene expression during gonad development in goats and mice.  Febs Open Bio. 6, 4-156

Andria-Mananjara DE, Rasamoelina H, Vandeputte M. 2016. Comparison of rearing performances and intermuscular bone number in the mirror and nude genotypes of common carp (Cyprinus carpio L.) in a controlled field test in Madagascar. Aquacult Rep. 3, 77-81

Angulo L, Guyader-Joly C, Auclair S, Hennequet-Antier C, Papillier P Boussaha M, Fritz S, Hugot K, Moreews F, Ponsart C, Humblot P, Dalbies-Tran R. 2016. An integrated approach of bovine oocyte quality, from the phenotype to the genes. Reprod Fertil Dev. 28, 1276-1287     

Antigny F, Hautefort A, Meloche J, Belacel-Ouari M, Manoury B, Rucker-Martin C, Longin C, Potus F, Nadeau V, Tremblay E, Ruffenach G, Bourgeois A, Dorfmueller P, Breuils-Bonnet,S, Fadel E, Ranchoux B, Jourdon P, Girerd B, Montani D, Provencher S, Bonnet S, Simonneau G, Humbert M, Perros F. 2016. Potassium channel subfamily K member 3 (KCNK3) contributes to the development of pulmonary arterial hypertension. Circulation. 133, 1371-1385

Arbre M, Rochette Y, Guyader J,  Lascoux C, Gomez LM, Eugene M, Morgavi DP, Renand G, Doreau M, Martin C. 2016. Repeatability of enteric methane determinations from cattle using either the SF6 tracer technique or the GreenFeed system. Anim Prod Sci. 56, 238-243

Ayache J, Pechoux C, Jaillard D, Payre B, Pignot-Paintrand I, Le Cam E. 2016. Dark field transmission electron microscopy imaging for biological and soft matter systems. Macromol Symp. 361, 73-81   
Balasubramanian MN, Panserat S, Dupont-Nivet M, Quillet E, Montfort J, Le Cam A, Medale F, Kaushik SJ, Geurden I. 2016. Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure. BMC Genomics. 17, 449 

Bedere N, Delaby L, Ducrocq V, Leurent-Colette S, Disenhaus C. 2016. Toward improved postpartum cyclicity of primiparous dairy cows: Effects of genetic merit for production traits under contrasting feeding systems. J Dairy Sci. 99, 1266-1276

Besson M, Aubin J, Komen H, Poelman M, Quillet E, Vandeputte M, van Arendonk JAM, de Boer, IJM. 2016. Environmental impacts of genetic improvement of growth rate and feed conversion ratio in fish farming under rearing density and nitrogen output limitations. J Cleaner Prod. 116, 100-109

Besson M, Vandeputte M , van Arendonk JAM, Aubin J, de Boer IJM, Quillet E,  Komen H. 2016. Influence of water temperature on the economic value of growth rate in fish farming: The case of sea bass (Dicentrarchus labrax) cage farming in the Mediterranean. Aquaculture. 462, 47-55 

Biacchesi S, Jouvion G, Mérour E, Boukadiri A, Desdouits M, Ozden S, Huerre M, Ceccaldi PE, Brémont M. 2016. Rainbow trout (Oncorhynchus mykiss) muscle satellite cells are targets of salmonid alphavirus infection. Vet Res. 47, 9

Boichard D, Grohs C, Danchin-Burge C, Capitan A. Genetic defects: definition, origin, transmission and evolution, and mode of action. Inra Prod Anim. 29, 297-306 

Boichard D, Grohs C, Michot P, Danchin-Burge C, Capitan A, Genestout L, Barbier S, Fritz S. 2016. Taking into account the genetic defects in selection: the case of cattle. Inra Prod Anim. 29, 351-358  

Boichard D, Ducrocq V, Croiseau P, Fritz S. 2016. Genomic selection in domestic animals: Principles, applications and perspectives. CR Biol. 339, 274-277 

Boitard S, Boussaha M, Capitan A, Rocha D, Servin B. 2016. Uncovering adaptation from sequence data: Lessons from genome resequencing of four cattle breeds. Genetics. 203, 433-450

Boitard S, Rodríguez W, Jay F, Mona S, Austerlitz F. 2016. Inferring population size history from large samples of genome-wide molecular data - An approximate Bayesian computation approach. PLoS Genet. 12, e1005877        

Bonet MO, Mach N. 2016. Nutritional and non-nutritional factors may affect male infertility through epigenetic mechanisms. Nutr Hosp. 33, 1236-1244

Boussaha M, Michot P, Letaief R, Hozé C, Fritz S, Grohs C, Esquerré D, Duchesne A, Philippe R, Blanquet V, Phocas F, Floriot S, Rocha D, Klopp C, Capitan A, Boichard D. 2016. Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences. Genet Sel Evol. 48, 87

Campagne C, Reyes-Gomez E, Loiodice S, Gadin S, Ezagal J, Bernex F, Abitbol M, Louise A, Beermann F, Panthier JJ, Aubin-Houzelstein G, Egidy G.  2016. Haplosufficiency of PAX3 for melanoma development in Tyr::NRAS(Q61K); Cdkn2a(-/-) mice allows identification and sorting of melanoma cells using a Pax3(GFP) reporter allele. Melanoma Res. 26, 12-20

Chadi S, Polyte J, Lefevre L, Castille J, Ehanno A, Laubier J, Jaffrézic F, Le Provost F. 2016. Phenotypic and molecular alterations in the mammary tissue of R-spondin1 knock-out mice during pregnancy. PLoS One. 11, e0162566   

Chapuis H, Pincent C, Colleau JJ. 2016. Optimizing selection with several constraints in poultry breeding. J Anim Breed Genet. 133, 3-12

Clark A, Mach N. 2016. Exercise-induced stress behavior, gut-microbiota-brain axis and diet: a systematic review for athletes. J Int Soc Sports Nutr. 13, 43

Clark A, Mach Casellas N. 2016. Role of Vitamin D in the hygiene hypothesis: the interplay between vitamin D, vitamin D receptors, gut microbiota, and immune response. Front Immunol, 7-e627. 

Couix N, Gaillard C, Lauvie A, Mugnier S, Verrier E. 2016. Breeds both locally adapted and locally adopted, a condition for the sustainability of livestock activities. Cahiers Agriculture. 25, 650009

Davi H, Cailleret M, Restoux G, Amm A, Pichot C, Fady B. 2016. Disentangling the factors driving tree reproduction. EcoSphere. 7, e01389

Désert C, Merlot E, Zerjal T, Bed'Hom B, Härtle S, Le Cam A, Roux,PF, Baeza E,  Gondret F, Duclos M, Lagarrigue S. 2016. Transcriptomes of whole blood and PBMC in chickens. Comp Biochem Physiol. in press 

Ducat A, Doridot L, Calicchio R, Méhats C, Vilotte JL, Castille J, Barbaux S, Couderc B, Jacques S, Letourneur F, Buffat C, Le Grand F, Laissue P, Miralles F, Vaiman D. 2016. Endothelial cell dysfunction and cardiac hypertrophy in the STOX1 model of preeclampsia. Sci Rep. 6, 19196

Duchesne A, Grohs C, Michot P, Bertaud M, Boichard D, Floriot S, Capitan A. 2016. Du phénotype à la mutation causale : le cas des anomalies récessives bovines. Inra Prod Anim. 29, 319-328    

Dugat T, Rossignol MN, Rué O, Loux V, Marthey S, Moroldo M, Silaghi C, Höper D, Fröhlich J, Pfeffer M, Zweygarth E, Lagrée AC, Boulouis HJ, Haddad N. 2016. Draft anaplasma phagocytophilum genome sequences from five cows, two horses, and one roe deer collected in Europe. Genome Announc. 4, e00950-16       

Espinosa A, Silva AK, Sánchez-Iglesias A, Grzelczak M, Péchoux C, Desboeufs K, Liz-Marzán LM, Wilhelm C. 2016. Cancer cell internalization of gold nanostars impacts their photothermal efficiency in vitro and in vivo: toward a plasmonic thermal fingerprint in tumoral environment. Adv Healthc Mater. 5, 1040-1048

Eynard SE, Windig JJ, Hiemstra SJ, Calus MPL. 2016. Whole‑genome sequence data uncover loss of genetic diversity due to selection. Genet Sel Evol. 48-33

Fang ZH, Visker MHPW, Miranda G, Delacroix-Buchet A, Bovenhuis H, Martin P. 2016. The relationships among bovine alpha(S)-casein phosphorylation isoforms suggest different phosphorylation pathways. J Dairy Sci. 99, 8168-8177

Ferrari S, Horri K, Allal F, Vergnet, A, Benhaim D, Vandeputte M, Chatain B, Bégout ML. 2016. Heritability of boldness and hypoxia avoidance in European seabass, Dicentrarchus labrax. PLoS One. 11, e0168506

Fritz S, Michot P, Hoze C, Grohs C, Barbat-Leterrier A, Boussaha M, Boichard D, Capitan A. 2016. Anticiper l'émergence d'anomalies génétiques grâce aux données génomiques. Inra Prod Anim. 29, 339-350

Fulton JE, McCarron AM, Lund AR, Pinegar KN, Wolc A, Chazara O, Bed'Hom B, Berres M, Miller MM. 2016. A high-density SNP panel reveals extensive diversity, frequent recombination and multiple recombination hotspots within the chicken major histocompatibility complex B region between BG2 and CD1A1. Genet Sel Evol. 48, 1

Galan M, Razzauti M, Bard E, Bernard M, Brouat C, Charbonnel N, Dehne-Garcia A, Loiseau A, Tatard C, Tamisier L, Vayssier-Taussat M, Vignes H,  Cosson JF. 2016. 16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife. m Systems. 1, e0032-16

Gautier M, Moazami-Goudarzi K, Leveziel H, Grohs C, Rialle S, Kowalczyk R, Flori L . 2016. Deciphering the Wisent demographic and adaptive histories from individual whole-genome sequences. Molec Biol Evol. 33, 2801-2814

Gion A, Dassonneville R, Baloche G, Ducrocq V. 2016. Multiple trait genetic evaluation of clinical mastitis in three dairy cattle breeds. Animal. 10, 558-565   

Grade A, Chairi H,  Lallias D, Power DM, Ruano F, Leitao A, Drago T, King JW, Boudry P, Batista FM. 2016. New insights about the introduction of the Portuguese oyster, Crassostrea angulata, into the North East Atlantic from Asia based on a highly polymorphic mitochondrial region. Aquat Living Resour. 29, 404

Grohs C, Duchesne A, Floriot S, Deloche MC, Boichard D, Ducos A, Danchin-Burge C. 2016. L’Observatoire National des Anomalies Bovines, son action et ses résultats pour une aide efficace à la gestion des anomalies génétiques. Inra Prod Anim. 29, 307-318

Hamzić E, Kjærup RB, Mach N, Minozzi G, Strozzi F, Gualdi V, Williams JL, Chen J, Wattrang E, Buitenhuis B, Juul-Madsen HR, Dalgaard TS. 2016. RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations. BMC Genomics. 17, 82

Hervé PL, Descamps D, Deloizy C, Dhelft V, Laubreton D, Bouguyon E, Boukadiri A, Dubuquoy C, Larcher T, Benhamou PH, Eléouët JF, Bertho N, Mondoulet L, Riffault S. 2016. Non-invasive epicutaneous vaccine against Respiratory Syncytial Virus: Preclinical proof of concept. J Control Release. 243, 146-159

Hoffmann TW, Pham HP, Bridonneau C, Aubry C, Lamas B, Martin-Gallausiaux C, Moroldo M, Rainteau D, Lapaque N, Six A, Richard ML, Fargier E, Le Guern ME, Langella P, Sokol H. 2016. Microorganisms linked to inflammatory bowel disease-associated dysbiosis differentially impact host physiology in gnotobiotic mice. ISME Journal. 10, 460-477

Honvo-Houéto E, Henry C, Chat S, Layani S, Truchet S. 2016. The endoplasmic reticulum and casein-containing vesicles contribute to milk fat globule membrane. Mol Biol Cell. 27, 2946-2964

Hubert JN, Allal F, Hervet C, Ravakarivelo M, Jeney Z, Vergnet A,  Guyomard R, Vandeputte M. 2016. How could fully scaled carps appear in natural waters in Madagascar ? Proc Royal Soc Biol Sci. 283, 1-8

Imsland F., McGowan K., Rubin C-J., Henegar C., Sundström E. , Berglund J., Schwochow D., Gustafson U., Imsland P., Lindblad-Toh K., Lindgren G., Mikko S., Millon L., Wade C., Schubert M., Orlando L., T Penedo M-C., S Barsh G., Andersson L. 2016. Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation that underlies Dun camouflage color in horses. Nat Genet. 48, 152-158

Jimenez Mena B, Hospital F, Bataillon T. 2016. Heterogeneity in effective population size and its implications in conservation genetics and animal breeding. Conservation Genet Res. 8, 35-41

Jimenez Mena B, Tataru P, Brondum RF, Sahana G, Guldbrandtsen B, Bataillon T. 2016. One size fits all? Direct evidence for the heterogeneity of genetic drift throughout the genome. Biol Lett. 12, 1-4

Jimenez Mena B, Schad K, Hanna N, Lacy RC. 2016. Pedigree analysis for the genetic management of group-living species. Ecol Evol. 6, 3067- 3078

Jonas D, Ducrocq V, Fouilloux MN , Croiseau P. 2016. Alternative haplotype construction methods for genomic evaluation. J Dairy Sci. 99, 4537-4546

Jousselin E, Clamens AL, Galan M, Bernard M, Maman S, Gschloessl B, Duport MG, Meseguer A, Calevro F, Coeur D'Acier A. 2016. Assessment of a 16S rRNA amplicon Illumina sequencing procedure for studying the microbiome of a symbiont-rich aphid genus. Molec Ecol Res. 16, 628-640

Kadri NK, Harland C, Faux P, Cambisano N, Karim L, Coppieters W, Fritz S, Mullaart E, Baurain D, Boichard D, Spelman R, Charlier C, Georges M, Druet T. 2016. Coding and non-coding variants in HFM1, MLH3, MSH4, MSH5, RNF212 and RNF212B affect recombination rate in cattle. Genome Res. 26, 1323-1332

Kern EL, Cobuci JA, Costa CN, Ducrocq V. 2016. Survival analysis of productive life in Brazilian holstein using a piecewise Weibull proportional hazard model. Livest Sci. 185, 89-96

Khalifé M, Reine F, Paquet-Fifield S, Castille J, Herzog L, Vilotte M, Moudjou M, Moazami-Goudarzi K, Makhzami S, Passet B, Andréoletti O, Vilette D, Laude H, Béringue V, Vilotte JL. 2016. Mutated but Not Deleted Ovine PrPC N-Terminal Polybasic Region Strongly Interferes with Prion Propagation in Transgenic Mice. J Virol. 90, 1638-1646

Lamichhaney S, Fan G, Widemo F, Gunnarsson U, Thalmann DS, Hoeppner MP, Kerje S, Gustafson U, Shi C, Zhang H, Chen W, Liang X, Huang L, Wang J, Liang E, Wu Q, Lee SM, Xu X, Höglund J, Liu X, Andersson L. 2016. Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax). Nat Genet. 48, 84-88

Leroy G, Besbes,B, Boettcher P, Hoffmann I, Capitan A, Baumung R 2016. Rare phenotypes in domestic animals: unique resources for multiple applications. Anim Genet. 47, 141-153

Li X, Lund MS, Zhang Q, Costa, CN, Ducrocq V. 2016. Short communication: Improving accuracy of predicting breeding values in Brazilian Holstein population by adding data from Nordic and French Holstein populations. J Dairy Sci. 99, 4574-4579

Llopis M, Cassard AM, Wrzosek L, Boschat L, Bruneau A, Ferrere G, Puchois V, Martin JC, Lepage P, Le roy T, Lefevre L, Langelier B, Cailleux F, González-Castro A M., Rabot S, Gaudin F, Agostini H, Prévot S, Berrebi D, Ciocan D, Jousse C, Naveau S, Gérard P, Perlemuter G. 2016. Intestinal microbiota contributes to individual susceptibility to alcoholic liver disease. Gut. 65, 830-839 

Loyau T, Zerjal T, Rodenburg T B, Fablet J, Tixier-Boichard M, Pinard-Van der Laan MH, Mignon-Grasteau S. 2016. Heritability of body surface temperature in hens estimated by infrared thermography at normal or hot temperatures and genetic correlations with egg and feather quality. Animal, in press    

Loyau T, Hennequet-Antier C, Coustham V, Berri C, Leduc M, Crochet S, Sannier M, Duclos MJ, Mignon-Grasteau S, Tesseraud S, Brionne A, Metayer-Coustard S, Moroldo M, Lecardonnel J, Martin P, Lagarrigue S, Yahav S, Collin A. 2016. Thermal manipulation of the chicken embryo triggers differential gene expression in response to a later heat challenge. BMC Genomics. 17, 329

Lund MS, Van Den Berg I, Ma P, Brondum RF, Su G. 2016. Review: How to improve genomic predictions in small dairy cattle populations. Animal. 10, 1042-1049 

Mach N, Plancade S, Pacholewska A, Lecardonnel J, Rivière J, Moroldo M, Vaiman A, Morgenthaler C, Beinat M, Nevot A, Robert C, Barrey E. 2016. Integrated mRNA and miRNA expression profiling in blood reveals candidate biomarkers associated with endurance exercise in the horse.  Sci Rep. 6, 22932

Mahammi FZ, Gaouar SB, Laloë D, Faugeras R, Tabet-Aoul N, Rognon X, Tixier-Boichard M, Saidi-Mehtar N. 2016. A molecular analysis of the patterns of genetic diversity in local chickens from western Algeria in comparison with commercial lines and wild jungle fowls. J Anim Breed Genet. 133, 59-70

Maisonnasse P, Bouguyon E, Piton G, Ezquerra A, Urien C, Deloizy C, Bourge M, Leplat J-J , Simon G, Chevalier C, Vincent-Naulleau S, Crisci E, Montoya M, Schwartz-Cornil I, Bertho N. 2016. The respiratory DC/macrophage network at steady-state and upon influenza infection in the swine biomedical model. Mucosal Immunol. 9, 835-849

Mazet O, Rodriguez W, Grusea S, Boitard S, Chikhi L. 2016. On the importance of being structured: instantaneous coalescence rates and human evolution-lessons for ancestral population size inference? Heredity. 116, 362-371

Merlot E, Gilbert H, Le Floch N. 2016. Metabolic response to an inflammatory challenge in pigs divergently selected for residual feed intake. J Anim Sci. 94, 563-573

Michenet A, Saintilan R, Venot E,  Phocas F. 2016. Insights into the genetic variation of maternal behavior and suckling performance of continental beef cows. Genet Sel Evol. 48, 45     

Michenet A, Barbat M, Saintilan R, Venot E,  Phocas F. 2016. Detection of quantitative trait loci for maternal traits using high-density genotypes of Blonde d’Aquitaine beef cattle. BMC Genet. 17, 88 

Michot P, Chahory S, Marete A, Grohs C, Dagios D, Donzel E, Aboukadiri A, Deloche MC, Allais-Bonnet A, Chambrial M, Barbey S, Genestout L, Boussaha M, Danchin-Burge C, Fritz S, Boichard D, Capitan A. 2016. A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds. Genet Sel Evol. 48, 56

Montazer-Torbati F, Boutinaud M, Brun N, Richard C, Neveu A, Jaffrézic F, Laloë D, LeBourhis D, Nguyen M, Chadi S, Jammes H, Renard JP, Chat S, Boukadiri A, Devinoy E. 2016. Differences during the first lactation between cows cloned by somatic cell nuclear transfer and non-cloned cows. J Dairy Sci. 99, 4778-4794

Osteil P, Moulin A, Santamaria C, Joly T, Jouneau L, Aubry M, Tapponnier Y, Archilla C, Schmaltz-Panneau B, Lecardonnel J, Barasc H, Mouney-Bonnet N, Genthon C, Roulet A, Donnadieu C, Acloque H, Gocza E.... 2016. A panel of embryonic stem cell lines reveals the variety and dynamic of pluripotent states in rabbits. Stem Cell Rep. 7, 383-398

Pacholewska A, Mach N, Mata X, Vaiman A, Schibler L, Barrey E, Gerber V. 2016. Novel equine tissue miRNAs and breed-related miRNA expressed in serum. BMC Genomics. 17, 831

Pauloin A, Adenot P, Hue Beauvais C, Chanat E. 2016. The perilipin-2 (adipophilin) coat of cytosolic lipid droplets is regulated by an Arf1-dependent mechanism in HC11 mouse mammary epithelial cells. Cell Biol Int. 40, 143-155

Pegolo S, Cecchinato A, Mach N, Babbucci M, Pauletto M, Bargelloni L, Schiavon S, Bittante G. 2016. Transcriptomic changes in liver of young bulls caused by diets low in mineral and protein contents and supplemented with n-3 fatty acids and conjugated linoleic acid. PLoS One. 11, e0167747.

Pham MH, Tran XH, Berthouly-Salazar C, Tixier-Boichard M, Chen CF, Lee YP. 2016. Monitoring of genetic diversity in Taiwan conserved chickens assessed by pedigree and molecular data. Livest Sci. 184, 85- 91

Phocas F, Belloc C, Bidanel J, Delaby L,  Dourmad JY, Dumont B, Ezanno P,  Fortun-Lamothe L, Foucras G, Frappat B, González-García E,  Hazard D, Larzul C, Lubac S, Mignon-Grasteau S, Moreno CR, Tixier-Boichard M, Brochard. 2016. Review: Towards the agroecological management of ruminants, pigs and poultry through the development of sustainable breeding programmes: I-selection goals and criteria. Animal. 10, 1749-1759.           

Phocas F, Belloc C, Bidanel J, Delaby L,  Dourmad JY, Dumont B, Ezanno P,  Fortun-Lamothe L, Foucras G, Frappat B, González-García E,  Hazard D, Larzul C, Lubac S, Mignon-Grasteau S, Moreno CR, Tixier-Boichard M, Brochard. 2016. Review: Towards the agroecological management of ruminants, pigs and poultry through the development of sustainable breeding programmes: II. Breeding strategies. Animal. 10, 1760-1769.          

Ramayo-Caldas Y, Mach N, Lepage P, Levenez F, Denis C, Lemonnier G, Leplat JJ, Billon Y, Berri M, Dore J, Rogel-Gaillard C, Estelllé J. 2016. Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits. ISME Journal          

Ramayo-Caldas Y, Renand G, Ballester M, Saintilan R, Rocha D. 2016. Multi-breed and multi-trait co-association analysis of meat tenderness and other meat quality traits in three French beef cattle breeds. Genet Sel Evol. 48, 37

Remot A, Descamp D, Jouneau L, Laubreto D, Dubuquoy C, Bouet S, Lecardonnel J, Rebours E, Petit Camurdan A, Riffault S. 2016. Flt3 ligand improves the innate response to respiratory syncytial virus and limits lung disease upon RSV reexposure in neonate mice. Eur J Immunol. 46, 874-884 

Renand G, Maupetit D. 2016. Assessing individual differences in enteric methane emission among beef heifers using the GreenFeed Emission Monitoring system: effect of the length of testing period on precision. Anim Prod Sci. 56, 218-223

Roux PF, Frésard L, Boutin M, Leroux S, Klopp C, Djari A, Esquerré D, Martin PG, Zerjal T, Gourichon D, Pitel F, Lagarrigue S. 2016. The extent of mRNA editing is limited in chicken liver and adipose, but impacted by tissular context, genotype, age, and feeding as exemplified with a conserved edited site in COG3. G3 (Bethesda). 6, 321-335

Sadoul B, Foucard A, Valotaire C, Labbe L, Goardon L, LeCalvez JM, Medale F, Quillet E, Dupont-Nivet M, Geurden I, Prunet P, Colson V. 2016. Adaptive capacities from survival to stress responses of two isogenic lines of rainbow trout fed a plant-based diet. Sci Rep. 6, 35957.

Sanchez MP, Govignon-Gion A,  Ferrand M,  Gelé M, Pourchet D, Amigues Y, Fritz S, Boussaha M, Capitan A, Rocha D, Miranda G, Martin P, Brochard M, Boichard D. 2016. Whole-genome scan to detect quantitative trait loci associated with milk protein composition in 3 French dairy cattle breeds. J Dairy Sci. 99,   8203-8215

Santana ML, Pereira RJ, Bignardi AB, Ayres DR, Menezes GRO, Silva LOC, Leroy G, Machado CHC, Josahkian LA, Albuquerque LG. 2016. Structure and genetic diversity of Brazilian Zebu cattle breeds assessed by pedigree analysis. Livest Sci. 187, 6-15

Silalahi P, Tribout T,  Prunier A, Billon Y, Gogue J, Bidanel JP. 2016. Estimation of the effects of selection on French Large White reproductive performance using frozen semen. J Anim Sci. 94, 3655-3662

Simon M, Lopez-Garcia P, Deschamps P, Restoux G, Bertolino P, Moreira D, Jardillier L. 2016. Resilience of freshwater communities of small microbial eukaryotes undergoing severe drought events. Front Microbiol. 7, 812

Solopova A, Formosa-Dague C, Courtin P, Furlan S, Veiga P, Pechoux C, Armalyte J, Sadauskas M, Kok J, Hols P, Dufrene YF, Kuipers OP, Chapot-Chartier MP, Kulakauskas S. 2016. Regulation of cell wall plasticity by nucleotide metabolism in Lactococcus lactis. J Biol Chem. 291, 11323-11336

Trachsel DS,  Giraudet A, Maso D, Hervé G, Hauri DD, Barrey E, Robert C. 2016. Relationships between body dimensions, body weight age, gender, breed and echoradiographic dimensions in young endurance horses. BMC Vet Res. 12, 226

Tuggle CK, Giuffra E, White SN, Clarke L, Zhou H, Ross PJ, Acloque H, Reecy JM, Archibald A, Bellone RR, Boichard M, et al. 2016. GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes. Anim Genet. 47, 528-533              

Valentino SA, Tarrade A, Aioun J, Mourier E, Richard C, Dahirel M,Rousseau-Ralliard D, Fournier N,  Aubrière MC, Lallemand MS, Camous S, Guinot M, Charlier M, Aujean E, Al Adhami H, Fokkens PH, Agier L, Boere JA, Cassee FR, Slama R, Chavatte-Palmer P. 2016. Maternal exposure to diluted diesel engineexhaust alters placental function and induces intergenerational effects in rabbits. Part Fibre Toxicol. 13, 39

Van Den Berg I, Boichard D, Lund MS. 2016. Comparing power and precision of within and multi breed genome wide association studies of production traits using whole genome sequence data for five French and Danish dairy cattle breeds. J Dairy Sci. 99, 8932-8945

Van den Berg I, Boichard D, Guldbrandtsen B, Lund MS. 2016. Using sequence variants in linkage disequilibrium with causative mutations to improve across breed prediction in dairy cattle: a simulation study. G3 (Bethesda). 9, 2553-2561

Van den Berg I, Boichard D, Lund MS. 2016. Sequence variants selected from a multibreed GWAS can improve the reliability of genomic predictions in dairy cattle. Genet Sel Evol. 48, 83

Van Pelt ML, Ducrocq V, de Jong G, Calus MPL, Veerkamp RF. 2016. Genetic changes of survival traits over the past 25 yr in Dutch dairy cattle. J Dairy Sci. 99, 9810-9819

Vanbergue E1 Peyraud JL, Guinard-Flament J, Charton C, Barbey S, Lefebvre R, Gallard Y, Hurtaud C. 2016. Effects of DGAT1 K232A polymorphism and milking frequency on milk composition and spontaneous lipolysis in dairy cows. J Dairy Sci. 99, 5739- 5749

Vandeputte M, Porte JD, Auperin B, Dupont-Nivet M, Vergnet A, Valotaire C, Claireaux G, Prunet P, Chatain, B. 2016. Quantitative genetic variation for post-stress cortisol and swimming performance in growth-selected and control populations of European sea bass (Dicentrarchus labrax). Aquaculture. 455, 1-7

Veron V, Panserat S, Le Boucher R, Labbé L, Quillet E, Dupont-Nivet M, Médale F. 2016. Long-term feeding a plant-based diet devoid of marine ingredients strongly affects certain key metabolic enzymes in the rainbow trout liver. Fish Physiol Biochem. 42, 771-785

Vidic J, Richard CA, Pechoux-Longin C, Da Costa B, Bertho N, Mazerat S, Delmas B, Chevalier C. 2016. Amyloid assemblies of influenza a virus PB1-F2 protein Damage membrane and induce cytotoxicity. J Biol Chem. 291, 739-751

Wragg D, Marti-Marimon M, Basso B, Bidanel JP, Labarthe E, Bouchez O, Le Conte Y, Vignal A. 2016. Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly. Sci Rep. 6, 27168

Xiao L, Estellé J, Kiilerich P, Ramayo-Caldas Y, Xia Z, Feng Q, Liang S, Pedersen A, Kjeldsen NJ, Liu C, Maguin E, Doré J, Pons N, Le Chatelier E, Prifti E, Li J, Jia H, Liu X, Xu X, Ehrlich SD, Madsen L, Kristiansen K, Rogel-Gaillard C, Wang J. 2016. A reference gene catalogue of the pig gut microbiome. Nat Microbiol. 1, 16161

Xu WJ, Fiume E, Coen O, Pechoux C, Lepiniec L, Magnani E. 2016. Endosperm and nucellus develop antagonistically in Arabidopsis seeds. Plant Cell. 28, 1343-1360

Younes M, Barrey E, Cottin F, Robert C. 2016. Elimination in long-distance endurance rides: insights from the analysis of 7,032 starts in 80 to 160 km competitions. Comp Exercise Physiol. 12, 157-167

Younes M, Robert C, Barrey E, Cottin F. 2016. Effects of age, exercise duration, and test conditions on heart rate variability in young endurance horses. Front Physiol. 7, 155