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24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018

Menu Logo Principal AgroParisTech Université Paris-Saclay


GABI : Génétique Animale et Biologie IntégrativeUnité Mixte de Recherche INRA - AgroParisTech

Publications 2019

Alfonso S, Blanc M, Joassard L, Keiter SH, Munschy C, Loizeau V, Bégout ML, Cousin X. 2019. Examining multi- and transgenerational behavioral and molecular alterations resulting from parental exposure to an environmental PCB and PBDE mixture. Aquat Toxicol. 208, 29-38

Arguello H, Estelle J, Leonard FC, Crispie F, Cotter PD, O'Sullivan O, Lynch H, Walia K, Duffy G, Lawlor PG, Gardiner GE. 2019. Influence of the intestinal microbiota on colonization resistance to Salmonella and the shedding pattern of naturally exposed pigs. mSystems. 4,e00021-19

Arnal, M, Larroque H, Leclerc H, Ducrocq V, Robert-Granie C. 2019. Genetic parameters for first lactation dairy traits in the Alpine and Saanen goat breeds using a random regression test-day model. Genet Sel Evol. 51, 43

Auclair-Ronzaud J, Benoist S, Dubois C, Frejaville M, Jousset T, Jaffrezic F, Wimel L, Chavatte-Palmer P. 2019. No-contact microchip monitoring of body temperature in yearling horses.  J Eq Vet Sci. 86, 102892.

Auger S, Henry C, Pechoux C, Lejal N, Zanet V, Nikolic MV, Manzano M, Vidic J. 2019. Exploring the impact of Mg-doped ZnO nanoparticles on a model soil microorganism Bacillus subtilis. Ecotoxicol Environ Saf. 182, UNSP 109421

Ben Jemaa S, Kdidi S, Gdura AM, Dayhum AS, Eldaghayes IM, Boussaha M, Rebours E, Yahyaoui EM. 2019. Inferring the population structure of the Maghreb sheep breeds using a medium-density SNP chip. Anim Genet. 50, 526.533

Ben Jemaa S, Thamri N, Mnara S, Rebours E, Rocha D, Boussaha M. 2019. Linkage disequilibrium and past effective population size in native Tunisian cattle. Genet Mol Biol. 42, 52-61

Bernelin-Cottet C, Urien C, McCaffrey J, Collins D Donadei A, McDaid D, Jakob V, Barnier-Quer C, Collin N, Bouguyon E, Bordet E, Barc C, Boulesteix O, Leplat JJ, Blanc F, Contreras V, Bertho N, Moore AC, Schwartz-Cornil I. 2019. Electroporation of a nanoparticle-associated DNA vaccine induces higher inflammation and immunity compared to its delivery with microneedle patches in pigs. J Control Release. 308, 14-28

Bernelin-Cottet C, Urien C, Fretaud M, Langevin C, Trus I, Jouneau L, Blanc F, Leplat JJ, Barc C, Boulesteix O, Riou M, Dysart M, Mahé S, Studsrub E, Nauwynck H, Bertho N, Bourry O, Schwartz-Cornil I. 2019. A DNA prime immuno-potentiates a modified live vaccine against the porcine reproductive and respiratory syndrome virus but does not improve heterologous protection. Viruses. 11, pii: E576.

Bérodier M, Brochard M, Boichard D, Dezetter C, Bareille N, Ducrocq V. 2019. Use of sexed semen and female genotyping affects genetic and economic outcomes of Montbéliarde dairy herds depending on the farming system considered. J Dairy Sci. 102, 10073-10087

Besson M, Allal F, Chatain B, Vergnet A, Clota F, Vandeputte M. 2019. Combining individual phenotypes of feed intake with genomic data to improve feed efficiency in sea bass. Front Genet. 10, 219

Biase FH, Hue I, Dickinson SE, Jaffrezic F, Laloe D, Lewin HA, Sandra O. 2019. Fine-tuned adaptation of embryo-endometrium pairs at implantation revealed by transcriptome analyses in Bos taurus. PLoS Biol. 17, e3000046

Billa PA, Faulconnier Y, Ye T, Chervet M, Le Provost F, Pires JAA, Leroux C. 2019. Deep RNA-Seq reveals miRNome differences in mammary tissue of lactating Holstein and Montbeliarde cows. BMC Genomics. 20, 621

Bordet E, Fretaud M, Crisci E, Bouguyon E, Rault S, Pezant J, Pleau A, Renson P, Giuffra E, Larcher T, Bourge M, Bourry O, Boulesteix O, Langevin C, Schwartz-Cornil I, Bertho N. 2019. Macrophage-B cell interactions in the inverted porcine lymph node and their response to porcine reproductive and respiratory syndrome virus. Front Immunol. 10, 953

Bourdon C, Bardou P, Aujean E, Le Guillou S, Tosser-Klopp G, Le Provost F. 2019. RumimiR: a detailed microRNA database focused on ruminant species. Database Oxford. 2019, baz099

Boushaba N, Boujenane I, Moazami-Goudarzi K, Flori L, Saïdi-Mehtar N, Tabet-Aoul N, Laloë D. 2019. Genetic diversity and relationships among six local cattle populations in semi-arid areas assessed by a bovine medium-density single nucleotide polymorphism data. Animal. 13, 8-14.

Cho IC, Park HB, Ahn JS, Han SH, Lee JB, Lim HT, Yoo CK, Jung EJ, Kim DH, Sun WS, Ramayo-Caldas Y, Kim SG, Kang YJ, Kim YK, Shin HS1, Seong PN, Hwang IS, Park BY, Hwang S, Lee SS, Ryu YC, Lee JH, Ko MS, Lee K, Andersson G, Pérez-Enciso M, Lee JW. 2019. A functional regulatory variant of MYH3 influences muscle fiber-type composition and intramuscular fat content in pigs. PLoS Genet. 15, e1008279

Coen O, Lu J, Xu WJ, De Vos D, Pechoux C, Domergue F, Grain D, Lepiniec L, Magnani E. 2019. Deposition of a cutin apoplastic barrier separating seed maternal and zygotic tissues. BMC Plant Biol. 19, 304

Cormier B, Batel A, Cachot J, Begout ML, Braunbeck T, Cousin X, Keiter SH. 2019. Multi-laboratory hazard assessment of contaminated microplastic particles by means of enhanced fish embryo test with the zebrafish (Danio rerio). Front Environ Sci. 7, 135

Crespo-Piazuelo D, Migura-Garcia L, Estelle J, Criado-Mesas L, Revilla M, Castello A, Munoz M, Garcia-Casco JM, Fernandez AI, Ballester M, Folch JM. 2019. Association between the pig genome and its gut microbiota composition. Sci Rep. 9, 8791

Croué I, Michenet A, Leclerc H, Ducrocq V. 2019. Genomic analysis of claw lesions in Holstein cows: Opportunities for genomic selection, quantitative trait locus detection, and gene identification. J Dairy Sci. 102, 6306–6318

D'Ambrosio J, Phocas F, Haffray P, Bestin A, Brard-Fudulea S, Poncet C, Quillet E, Dechamp N, Fraslin C, Charles M, Dupont-Nivet M. 2019. Genome-wide estimates of genetic diversity, inbreeding and effective size of experimental and commercial rainbow trout lines undergoing selective breeding. Genet Sel Evol. 51, 26

David I, Ricard A. 2019. A unified model for inclusive inheritance in livestock species. Genetics. 212, 1075-1099

De La Torre Capitan A, Andueza Urra JD, Renand G, Baumont R, Cantalapiedra Hijar G, Noziere P. 2019. Digestibility contributes to between-animal variation in feed efficiency in beef cows. Animal, 13:2821–2829

de Verdal H, O'Connell CM, Mekkawy W, Vandeputte M, Chatain B, Begout ML, Benzie JAH. 2019. Agonistic behaviour behaviour and feed efficiency in juvenile Nile tilapia Oreochromis niloticus. Aquaculture. 505, 271-279

Dezetter C, Boichard D, Bareille N, Grimard B, Le Mezec P, Ducrocq V. 2019. Dairy crossbreeding: Pros and cons for Holsteindairy systems. INRA Prod Anim. 32, 359-378

Dhara SP, Rau A, Flister MJ, Recka NM, Laiosa MD, Auer PL, Udvadia AJ. 2019. Cellular reprogramming for successful CNS axon regeneration is driven by a temporally changing cast of transcription factors. Sci Rep. 9, 14198

Dhorne-Pollet S, Crisci E, Mach N, Renson P, Jaffrézic F, Marot G, Maroilley T, Moroldo M, Lecardonnel J, Blanc F, Bertho N, Bourry O, Giuffra E. 2019. The miRNA-targeted transcriptome of porcine alveolar macrophages upon infection with Porcine Reproductive and Respiratory Syndrome Virus. Sci Rep. 9-3160

Doublet AC, Croiseau P, Fritz S, Michenet A, Hozé C, Danchin‑Burge C, Laloë D, Restoux G. 2019. The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds. Genet sel Evol. 51- 52

Ducat A, Vargas A Doridot L, Bagattin A, Lerner J, Vilotte JL, Buffat C, Pontoglio M, Miralles F, Vaiman D. 2019. Low-dose aspirin protective effects are correlated with deregulation of HNF factor expression in the preeclamptic placentas from mice and humans. Cell Death Discov. 5, 94

Dupont C, Hulot A, Jaffrezic F, Faure C, Czernichow S, di Clemente N, Racine C, Chavatte-Palmer P, Lévy R, Alifert group. 2019. Female ponderal index at birth and idiopathic infertility. J Dev Orig Health Dis. in press

Eckart V, Yamaguchi T, Franzke K, Bergmann SM, Boudinot P, Quillet E, Kawanobe M, de Haro NA, Fischer U. 2019. New cell lines for efficient propagation of koi herpesvirus and infectious salmon anaemia virus. J Fish Dis. 42, 181-187

El Jabri M., Sanchez M.P., Trossat P., Laithier C., Wolf V., Grosperrin P., Beuvier E., Rolet-Répécaud O., Gavoye S., Gauzere Y., Belysheva O., Notz E., Boichard D., Delacroix-Buchet A. 2019. Comparison of Bayesian and PLS regression methods for mid-infrared prediction of cheese-making properties in Montbéliarde cows. J Dairy Sci., 102:6943–6958.

Erlandsson L, Ducat A, Castille J, Zia I, Kalapotharakos G, Hedstrom E, Vilotte JL, Vaiman D, Hansson SR. 2019. Alpha-1 microglobulin as a potential therapeutic candidate for treatment of hypertension and oxidative stress in the STOX1 preeclampsia mouse model. Sci Rep. 9, 8561

Escouflaire E, Rebours E, Charles M, Orellana S, Cano M, Rivière J, Grohs C, Hayes H, Capitan A. 2019. Α de novo 3.8-Mb inversion affecting the EDA and XIST genes in a heterozygous female calf with generalized hypohidrotic ectodermal dysplasia. BMC Genomics. 20, 715

Fages A, …. Barrey E, …., Orlando L. 2019. Tracking five millennia of horse management with extensive ancient genome time series. Cell. 177, 1419-1435

Faggion S, Vandeputte M, Chatain B, Gagnaire PA, Allal F. 2019. Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L. Heredity. 122, 612-621

Fang ZH, Bovenhuis H, van Valenberg HJF, Martin P, Duchemin SI, Huppertz T, Visker MHPW. 2019. Genome-wide association study for alpha(S1)- and()alpha(S2) -casein phosphorylation in Dutch Holstein Friesian. J Dairy Sci. 102, 1374-1385

Fares-Taie LF, Nedelec B, David P, Angee C, Crippa S, Passet B, Vilotte J, Chassaing N, Kaplan J, Kostic C, Calvas P, Rozet J. 2019. Submicroscopic 13q32.1 deletions causing congenital microcoria modify the regulatory landscape of neighboring genes by enhancer adoption. Eur J Hum Genet. 96, 631-639

Fitzpatrick C, Bendek MF, Briones M, Farfán N, Silva VA, Nardocci G, Montecino M, Boland A, Deleuze JF, Villegas J, Villota C, Silva V, Lobos-Gonzalez L, Borgna V, Barrey E, Burzio LO, Burzio VA. 2019. Mitochondrial ncRNA targeting induces cell cycle arrest and tumor growth inhibition of MDA-MB-231 breast cancer cells through reduction of key cell cycle progression factors. Cell Death Dis. 10, 423

Flori L, Moazami-Goudarzi K, Alary V, Araba A, Boujenane I, Boushaba N, Casabianca F, Casu S, Ciampolini R, Coeur D'acier A, Coquelle C, Delgado JV, El-Beltagi A, Hadjipavlou G, Jousselin E, Landi V, Lauvie A, Lecomte P, Ligda C, Marinthe C, Martinez A, Mastrangelo S, Menni D, Moulin CH, Osman MA, Pineau O,Portolano B, Rodellar C, Saidi-Mehtar N, Sechi T, Sempere G, Thevenon S, Tsiokos D, Laloë D, Gautier M. 2019. A genomic map of climate adaptation in Mediterranean cattle breeds. Mol Ecol. 28, 1009-1029.

Foissac S, Djebali S, Munyard K, Vialaneix N, Rau A, Muret K, Esquerré D, Zytnicki M, Derrien T, Bardou P, Blanc F, Cabau C, Crisci E, Dhorne-Pollet S, Drouet F, Faraut T, Gonzalez I, Goubil A, Lacroix-Lamandé S, Laurent F, Marthey S, Marti-Marimon M, Momal-Leisenring R, Mompart F, Quéré P, Robelin D, Cristobal MS, Tosser-Klopp G, Vincent-Naulleau S, Fabre S, Pinard-Van der Laan MH, Klopp C, Tixier-Boichard M, Acloque H, Lagarrigue S, Giuffra E. 2019. Multi-species annotation of transcriptome and chromatin structure in domesticated animals. BMC Biol. 17, 108.

Fraslin C, Brard-Fudulea S, D’Ambrosio J, Bestin A, Charles M, Haffray P, Quillet E, Phocas F. 2019. Rainbow trout resistance to bacterial cold water disease: two new quantitative trait loci identified after a natural disease outbreak on a French farm. Anim Genet. 50,293-297

George PBL, Lallias D, Creer S, Seaton FM, Kenny JG, Eccles RM, Griffiths RI, Lebron I, Emmett BA, Robinson DA, Jones DL. 2019. Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems. Nat Commun. 10, 1107

Gervais L, Perrier C, Bernard M, Merlet J, Pemberton JM, Pujol B, Quéméré E. 2019. RAD-sequencing for estimating genomic relatedness matrix-based heritability in the wild: A case study in roe deer. Mol Ecol Resour, in press

Giuffra E, Tuggle CK, FAANG Consortium. 2019. Functional annotation of animal genomes (FAANG): Current achievements and roadmap. Annu Rev Anim Biosci. 7, 65-88

Gobé C, El Zaiat M, Meunier N, André M, Sellem E, Congar P, Jouneau L, Allais-Bonnet A, Naciri I, Passet B, Pailhoux E, Pannetier M. 2019. Dual role of DMXL2 in olfactory information transmission and the first wave of spermatogenesis. PLoS Genet. 15,  e1007909

Godichon-Baggioni A, Maugis-Rabusseau C, Rau A. 2019. Clustering transformed compositional data using K-means, with applications in gene expression and bicycle sharing system data. J Appl Stat. 46, 47, 65

Grilz-Seger G, Neuditschko M, Ricard A, Velie B, Lindgren G, Mesaric M, Cotman M, Horna M, Dobretsberger M, Brem G, Druml T. 2019. Genome-wide homozygosity patterns and evidence for selection in a set of European and near eastern horse breeds. Genes (Basel). 10, 491

Guillocheau GM, El Hou A, Meersseman C, Esquerré D, Rebours E, Letaief R, Simao M, Hypolite N, Bourneuf E, Bruneau N, Vaiman A, Vander Jagt CJ, Chamberlain  AJ, Rocha D. 2019. Survey of allele specific expression in bovine muscle. Sci Rep. 9, 4297

Helary L, Castille J, Passet B, Vaiman A, Beauvallet C, Jaffrezic F, Charles M, Tamzini M, Baraige F, Letheule M, Laubier J, Moazami-Goudarzi K, Vilotte JL, Blanquet V, Duchesne A. DNAJC2 is required for mouse early embryonic development. Biochem Biophys Res Commun. 516, 258-263

Hirsch TZ, Martin-Lanneree S, Reine , Hernandez-Rapp J, Herzog L, Dron M, Privat N, Passet B, Halliez S, Villa-Diaz A, Lacroux C, Klein V, Haik S, Andreoletti O, Torres JM, Vilotte JL, Beringue V, Mouillet-Richard S. 2019. Epigenetic control of the Notch and Eph signaling pathways by the prion protein: implications for prion diseases.  Mol Neurobiol. 56, 2159-2173

Hue I, Dufort I, Vitorino Carvalho A, Laloe D, Peynot N, Degrelle SA, Viebahn C, Sirard MA. 2019. Different pre-implantation phenotypes of bovine blastocysts produced in vitro. Reproduction. 157, 163-178

Hue-Beauvais C, Aujean E, Miranda G, Ralliard-Rousseau D, Valentino S, Brun N, Ladebese S, Pechoux C, Chavatte-Palmer P, Charlier M. 2019. Impact of exposure to diesel exhaust during pregnancy on mammary gland development and milk composition in the rabbit. PLoS One, 14-e0212132

Jeandard D, Smirnova A, Tarassov I, Barrey E, Smirnov A, Entelis N. 2019. Import of non-coding RNAs into human mitochondria: A critical review and emerging approaches. Cells. 8, 286

Jehl F, Désert C, Klopp C, Brenet M, Rau A, Leroux S, Boutin M, Lagoutte L, Muret K, Blum Y, Esquerré D, Gourichon D, Burlot T, Collin A, Pitel F, Benani A, Zerjal T, Lagarrigue S. 2019. Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach. BMC Genomics. 20, 1033

Kalo D, Vitorino Carvalho A, Archilla C, Duranthon V, Moroldo M, Levin Y, Kupervaser M, Smith Y, Roth Z. 2019. Mono(2-ethylhexyl) phthalate (MEHP) induces transcriptomic alterations in oocytes and their derived blastocysts. Toxicology. 421, 59-73

Lambert M, Capuano V, Boet A, Tesson L, Bertero T, Nakhleh MK, Remy S, Anegon I, Pechoux C, Hautefort A, Rucker-Martin C, Manoury B, Domergue V, Mercier O, Girerd B, Montani D, Perros F, Humbert M, Antigny F. 2019. Characterization of Kcnk3-mutated rat, a novel model of pulmonary hypertension. Circ Res. 125, 678-695

Larsen FT, Bed'Hom B, Naghizadeh M, Kjaerup RB, Zohari S, Dalgaard TS. 2019. Immunoprofiling of peripheral blood from infectious bronchitis virus vaccinated MHC-B chicken lines - Monocyte MHC-II expression as a potential correlate of protection. Dev Comp Immunol. 96, 93- 102

Larsen FT, Bed’Hom B, Guldbrandtsen B, Dalgaard TS. 2019. Identification and tissue-expression profiling of novel chicken c-type lectin-like domain containing proteins as potential targets for carbohydrate-based vaccine strategies. Mol Immunol. 114, 216-225

Le Guillou S, Laubier J, Pechoux C, Aujean E, Castille J, Leroux C, Le Provost F. 2019. Defects of the endoplasmic reticulum and changes to lipid droplet size in mammary epithelial cells due to miR-30b-5p overexpression are correlated to a reduction in Atlastin 2 expression. Biochem Biophys Res Commun. 512, 283-288

Le Moyec L, Robert C, Triba NM, Bouchema N, Mach N, Rivière J, Zalachas-Rebours E, Barrey E. 2019. A first step toward unraveling the energy metabolism in endurance horses: Comparison of plasma nuclear magnetic resonance metabolomic profiles before and after different endurance race distances. Front Mol Biosci. 6, 45

Le Roy P, Ducos A, Phocas F. 2019. What performance for tomorrow’s animals? Breeding goals and selection methods. INRA Prod Anim. 32, 233-246

Li JY, Bed'hom B, Marthey S, Valade M, Dureux A, Moroldo M, Pechoux C, Coville JL, Gourichon D, Vieaud A, Dorshorst B, Andersson L, Tixier-Boichard M. 2019. A missense mutation in TYRP1 causes the chocolate plumage color in chicken and alters melanosome structure. Pigment Cell Melanoma Res. 32, 381-39

Liu A., Lund M.S., Boichard D., Karaman E., Fritz S., Aamand G.P., Nielsen U.S., Wang Y., Su G. 2020. Improvement of genomic prediction by additional single nucleotide polymorphisms selected from whole genome sequencing data. Heredity, ehead

Magadan S, Krasnov A, Hadi-Saljoqi S, Afanasyev S, Mondot S, Lallias D, Castro R, Salinas I, Sunyer O, Hansen J, Koop BF, Lefranc MP, Boudinot P. 2019. Standardized IMGT (R) nomenclature of salmonidae IGH genes, the paradigm of Atlantic Salmon and Rainbow Trout: From genomics to repertoires. Front Immunol. 10, 2541

Martin P, Taussat S, Vinet A, Krauss D, Maupetit D, Renand G. 2019. Genetic parameters and genome-wide association study regarding feed efficiency and slaughter traits in Charolais cows. J Anim Sci. 97, 3684-3698

Martin P, Baes C, Houlahan K, Richardson CM, Jamrozik J, Miglior F. 2019. Genetic correlations among selected traits in Canadian Holsteins. Can J Anim Sci. 99(4):693-704

Massacci FR, Lovito C, Tofani S, Tentellini M, Genovese DA, De Leo AAP, Papa P, Magistrali CF, Manuali E, Trabalza-Marinucci M, Moscati L, Forte C. 2019. Dietary Saccharomyces cerevisiae boulardii CNCM I-1079 positively affects performance and intestinal ecosystem in broilers during a Campylobacter jejuni infection. Microorganisms. 7, pii: E596

Mesbah-Uddin M, Guldbrandtsen B, Lund MS, Boichard D, Sahana G. 2019. Joint imputation of whole-genome sequence variants and large chromosomal deletions in cattle. J Dairy Sci. 102, 11193-11206

Mesbah-Uddin M, Hoze C, Michot P, Barbat A, Lefebvre R, Boussaha M, Sahana G, Fritz S, Boichard D, Capitan A. 2019. A missense mutation (p.Tyr452Cys) in the CAD gene compromises reproductive success in French Normande cattle. J Dairy Sci, 102:6340-6356

Muñoz M, Bozzi R, García-Casco J, Núñez Y, Ribani A, Franci O, García F, Škrlep M, Schiavo G, Bovo S, Utzeri VJ, Charneca R, Martins JM, Quintanilla R, Tibau J6, Margeta V, Djurkin-Kušec I, Mercat MJ, Riquet J, Estellé J, Zimmer C, Razmaite V, Araujo JP, Radović Č, Savić R, Karolyi D, Gallo M, Čandek-Potokar M, Fernández AI, Fontanesi L, Óvilo C. 2019. Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip. Sci Rep. 9, 13546

Munyaka PM, Kommadath A, Fouhse J, Wilkinson J, Diether N, Stothard P, Estellé J, Rogel-Gaillard C, Plastow G, Willing BP. 2019.  Characterization of whole blood transcriptome and early-life fecal microbiota in high and low responder pigs before, and after vaccination for Mycoplasma hyopneumoniae.  Vaccine. 37, 1743-1755

Muret K, Désert C, Lagoutte L, Boutin M, Gondret F, Zerjal T, Lagarrigue S. 2019. Long noncoding RNAs in lipid metabolism: literature review and conservation analysis across species. BMC Genomics. 20, 882

Navarro-Gonzalez N, Fourichon C, Blanquefort P, Delafosse A, Joly A, Ngwa-Mbot D, Biet F, Boichard D, Schibler L, Journaux L, Meens E, Guatteo R. 2019. Longitudinal Study of Mycobacterium avium subsp paratuberculosis Shedding Patterns and Concurrent Serological Patterns in Naturally Infected Dairy Cattle. J Dairy Sci. 102, 9117-9137

Navelsaker S, Magadan S, Jouneau L, Quillet E, Olesen NJ, Munang'andu HM, Boudinot P, Evensen Ø. 2019. Sequential immunization with heterologous viruses does not result in attrition of the B cell memory in Rainbow trout. Front Immunol. 10, 2687

Pan Q, Feron R, Yano A, Guyomard R, Jouanno E, Vigouroux E, Wen M, Busnel JM, Bobe J, Concordet JP, Parrinello H, Journot L, Klopp C, Lluch J, Roques C, Postlethwait J, Schartl M, Herpin A, Guiguen Y. 2019. Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation. PLoS Genet. 15, e1008013

Peyraud JL, Aubin J, Barbier M, Baumont R, Berri C, Bidanel J P, Citti C, Cotinot C, Ducrot C, Dupraz P, Faverdin P, Friggens N, Houot S, Nozières-Petit MO, Rogel-Gaillard C, Sante-Lhoutellier V. 2019. Science for tomorrow’s livestock farming: A forward thinking conducted at INRA. Inra Prod Anim. 32, 323-338

Pitel F, Calenge F, Aigueperse N, Estelle-Fabrellas J, Coustham V, Calandreau F, Morisson M, Pascale Chavatte-Palmer P, Ginane C. 2019. Role of the early environment in phenotypic variability and adaptation of animals to their environment. INRA Prod Anim. 32, 247-262

Piquereau J, Boet A, Péchoux C, Antigny F, Lambert M, Gressette M, Ranchoux B, Gambaryan N, Domergue V, Mumby S, Montani D, Adcock IM, Humbert M, Garnier A, Rucker-Martin C, Perros F. 2019. The BET bromodomain inhibitor I-BET-151 induces structural and functional alterations of the heart mitochondria in healthy male mice and rats. Int J Mol Sci. 27, pii: E1527

Plancade S, Clark A, Philippe C, Helbling JC, Moisan MP, Esquerré D, Moyec LL, Robert C, Barrey E, Mach N. 2019. Unraveling the effects of the gut microbiota composition and function on horse endurance physiology. Sci Rep. 9, 9620

Plasterer C, Tsaih SW, Lemke A, Schilling R, Dwinell M, Rau A, Aue P, Rui H, Fliste MJ. 2019. Identification of a rat mammary tumor risk locus that Is syntenic with the commonly amplified 8q12.1 and 8q22.1 regions in human breast cancer patients. G3 (Bethesda). 9, 1739-1743

Raliou M, Dembélé D, Düvel A, Bolifraud P, Aubert J, Mary-Huard T, Rocha D, Piumi F, Mockly S, Heppelmann M, Dieuzy-Labaye I, Zieger P, G E Smith D, Schuberth HJ, Sheldon IM, Sandra O. 2019. Subclinical endometritis in dairy cattle is associated with distinct mRNA expression patterns in blood and endometrium. PLoS One. 14, e0220244

Rau A, Dhara SP, Udvadia AJ, Auer P. 2019. Regeneration Rosetta : an interactive web application to explore regeneration-associated gene expression and chromatin accessibility. G3 (Bethesda). 9, 3953-3959.

Rau A, Flister M Rui H, Auer PL. 2019. Exploring drivers of gene expression in the Cancer Genome Atlas. Bioinformatics. 35, 62-68

Renand G, Vinet A, Decruyenaere V, Maupetit D, Dozias D. 2019. Methane and carbon dioxide emission of beef heifers in relation with growth and feed efficiency. Animals. 9, 1136

Revilla M, Friggens NC, Broudiscou LP, Lemonnier G, Blanc F, Ravon L, Mercat MJ, Billon Y, Rogel-Gaillard C, Le Floch N, Estellé J, Muñoz-Tamayo R. 2019. Towards the quantitative characterisation of piglets’ robustness to weaning: a modelling approach. Animal. in press.

Robic A, Morisson M, Leroux S, Gourichon D, Vignal A, Thebault N, Fillon V, Minvielle F, Bed'Hom B, Zerjal T, Pitel F. 2019. Two new structural mutations in the 5' region of the ASIP gene cause diluted feather color phenotypes in Japanese quail. Genet Sel Evol. 51, 12

Rousseau-Ralliard D, Valentino SA, Aubrière MC, Dahirel M, Lallemand MS, Archilla C, Jouneau L, Fournier N, Richard C, Aioun J, Vitorino Carvalho A, Lecardonel J, Slama R, Duranthon V, Cassee FR, Chavatte-Palmer P, Couturier-Tarrade A. 2019. Effects of first-generation in utero exposure to diesel engine exhaust on second-generation placental function, fatty acid profiles and foetal metabolism in rabbits: preliminary results. Sci Rep. 9, 9710

Ruet A, Lemarchand J, Parias C, Mach N, Moisan MP, Foury A, Briant C, Lansade L. 2019. Housing horses in individual boxes is a challenge with regard to welfare. Animals (Basel) 9. pii: E621

Ryskaliyeva A, Krupova Z,Henry C, Faye B, Konuspayeva G, Martin P. 2019. Comprehensive proteomic analysis of camel milk-derived extracellular vesicles. Int J Biol Chem. 12, 93-104 GaLac

Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P. 2019. Alternative splicing events expand molecular diversity of camel CSN1S2 increasing its ability to generate potentially bioactive peptides. Sci Rep. 9, 5243

Ryskaliyeva A, Henry C, Miranda G, Faye B, Konuspayeva G, Martin P. 2019. The main WAP isoform usually found in camel milk arises from the usage of an improbable intron cryptic splice site in the precursor to mRNA in which a GC-AG intron occurs. BMC Genet. 20, 14

Sanchez M.P., Ramayo-Caldas Y., Wolf V., Laithier C., El Jabri M., Michenet A., Boussaha M., Taussat S., Fritz S., Delacroix-Buchet A., Brochard M., Boichard D. 2019. Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese making properties and milk composition in Montbéliarde cows. Genet Sel Evol, 51, 34.

Sanchez MP, Wolf V,Laithier C, El Jabri M, Beuvier E, Rolet-Répécaud O, GaudillièreN, Minéry S, Ramayo-Caldas Y, Tribout T, Michenet A, Boussaha M, Taussat S, Fritz S, Delacroix-Buchet A, Grosperrin P, Brochard M, Boichard D. 2019. Genetic analysis of milk cheese-making traits predicted from mid-infrared spectra in Montbéliarde cows. INRA Prod Anim. 32, 379-398

Savilammi T, Primmer CR, Varadharajan S, Guyomard R, Guiguen Y, Sandve SR, Vollestad LA,Papakostas S, Lien S. 2019. The chromosome-level genome assembly of European grayling reveals aspects of a unique genome evolution process within Salmonids. G3 (Bethesda). 9, 1283-1294

Sellier P, Boichard D, Verrier E. 2019. La génétique animale à l‘Inra : soixante ans d'une histoire scientifique en prise avec le monde de la sélection et riche en rebondissements technologiques. Histoire Recherche Contemporaine. 8, 86-98

Skerniskyte J, Krasauskas R, Pechoux C, Kulakauskas S, Armalyte J, Suziedeliene E. 2019. Surface-Related Features and Virulence Among Acinetobacter baumannii Clinical Isolates Belonging to International Clones I and II. Front Microbiol. 9, 3116

Taussat S, Saintilan R, Krauss D, Maupetit D, Fouilloux MN, Renand G. 2019. Relationship between feed efficiency and slaughter traits of French Charolais bulls. J Anim Sci. 97, 2308-2319

Tesniere G, Ducrocq V, Boxenbaum E, Labatut J. 2019. National organizations and management tools for genetic improvement of dairy cattle: a comparison between France, Ireland and The Netherlands. Inra Prod Anim. 32, 37-49

Thelie A, Bailliard A, Seigneurin F, Zerjal T, Tixier-Boichard M, Blesbois E. 2019. Chicken semen cryopreservation and use for the restoration of rare genetic resources. Poult Sci. 98, 447-455

Theodorou I, Courtin P, Palussière S, Kulakauskas S,Bidnenko E, Péchoux C, Fenaille F, Penno C, Mahony J, van Sinderen D, Chapot-Chartier MP. 2019. A dual-chain assembly pathway generates the high structural diversity of cell-wall polysaccharides in Lactococcus lactis. J Biol Chem. 294, 17612- 17625

Vandeputte M, Bugeon J, Bestin A, Desgranges A, Allamellou JM, Tyran AS, Allal F, Dupont-Nivet M, Haffray PY. 2019. First evidence of realized selection response on fillet yield in rainbow trout Oncorhynchus mykiss, using sib selection or based on correlated ultrasound measurements. Front Genet. 10, 1225

Vandeputte M, Gagnaire PA, Allal F. The European sea bass: a key marine fish model in the wild and in aquaculture. Anim Genet. 50, 195–206

Vignal A, Boitard S, Thebault N, Dayo GK, Yapi-Gnaore V, Karim IYA, Berthouly-Salazar C, Palinkas-Bodzsar N, Guemene D, Thibaud-Nissen F, Warren WC, Tixier-Boichard M, Rognon X. 2019. A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes. Mol Ecol Resour. 19, 997-1014

Vilotte JL, Pailhoux E. 2019. Intérêts des techniques de modifications ciblées du génome («Génome Editing») chez les animaux de rente. Bull Acad Vét Fr. 172, 1-6

Wang S, Strandberg E, Viklund A, Windig JJ, Malm S, Lewis T, Laloë D, Leroy G. 2019. Genetic improvement of canine hip dysplasia through sire selection across countries. Vet J. 248, 18-24

Wu XP, Mesbah-Uddin M, Guldbrandtsen B, Lund MS, Sahana G. 2019. Haplotypes responsible for early embryonic lethality detected in Nordic Holsteins. J Dairy Sci. 102, 11116- 11123

Yamaguchi T, Quillet E, Boudinot P, Fischer U. 2019. What could be the mechanisms of immunological memory in fish? Fish Shellfish. Immunol. 85, 3-8

Zhu T, Corraze G, Plagnes-Juan E, Montfort J, Bobe J, Quillet E, Dupont-Nivet M, Skiba-Cassy S. 2019. MicroRNAs related to cholesterol metabolism affected by vegetable diet in rainbow trout (Oncorhynchus mykiss) from control and selected lines. Aquaculture. 498, 132-142