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24, chemin de Borde Rouge -Auzeville - CS52627 31326 Castanet Tolosan cedex - France

Last update: May 2021

Menu Logo Principal AgroParisTech Université Paris-Saclay SAPS - Sciences Animales Paris-Saclay


GABI : Génétique Animale et Biologie IntégrativeUnité Mixte de Recherche INRA - AgroParisTech

2022 publications

Abou el qassim L, Alonso J, Zhao K, Le Guillou S, Diez J, Vicente F, Fernandez-Sanjurjo M, Iglesias-Gutiérrez E, Guan L, Royo LJ. 2022. Differences in the microRNAs levels of raw milk from dairy cattle raised under extensive or intensive production systems. Veterinary Sciences. 

Abou el qassim L, Le Guillou S, Royo LJ. 2022. Variation of miRNA Content in Cow Raw Milk Depending on the Dairy Production System. Int J Mol Sciences.

Al Adhami H, Bardet AF, Dumas M, Cleroux E, Guibert S, Fauque P, Acloque H, Weber M. 2022. A comparative methylome analysis reveals conservation and divergence of DNA methylation patterns and functions in vertebrates. BMC Biol. 

Auclair-Ronzaud J, Jaffrézic F, Wimel L, Dubois C, Laloë D, Chavatte-Palmer P. 2022. Estimation of milk production in suckling mares and factors influencing their milk yield. Animal. 

Auzino B, Miranda G, Henry C, Krupova Z, Martini M, Salari F, Cosenza G, Ciampolini R, Martin P. 2022. Top-Down proteomics based on LC-MS combined with cDNA sequencing to characterize multiple proteoforms of Amiata donkey milk proteins. FOOD RESEARCH INTERNATIONAL.

Bars-Cortina D, Sakhawat AL, Pinol-Felis C, Motilva MJ. 2022. Chemopreventive effects of anthocyanins on colorectal and breast cancer: A review. SEM CANCER BIOL. 

Bedere N, Berghof TVL, Peeters K, Pinard-Van der Laan MH, Visscher J, David I, Mulder HA. 2022. Using egg production longitudinal recording to study the genetic background of resilience in purebred and crossbred laying hens. Gen Sel Evol. 

Belay T.K., Eikje L.S., Gjuvsland A.B., Nordbø O., Tribout T., Meuwissen T.H.E. 2022. Correcting for base-population differences and unknown parent groups in single-step genomic predictions of Norwegian Red Cattle. J Anim Sci, 100, skac227. 

Bertho S, Herpin A, Jouanno E, Yano A, Bobe J, Parrinello H, Journot L, Guyomard R, Muller T, Swanson P, McKinney G, Williamson K, Meek M, Schartl M, Guiguen Y. 2022. A nonfunctional copy of the salmonid sex-determining gene (sdY) is responsible for the apparent XY females in Chinook salmon, Oncorhynchus tshawytscha. G3. 

Bernard M, Dehaullon A, Gao G, Paul K, Lagarde H, Charles M, Prchal M, Danon J, Jaffrelo L, Poncet C, Patrice P, Haffray P, Quillet E, Dupont-Nivet M, Palti Y, Lallias D, Phocas F. 2022. Development of a High-Density 665 K SNP Array for Rainbow Trout Genome-Wide Genotyping. Front Genetics

Bes A, Noziere P, Renand G, Rochette Y, Guarnido-Lopez P, Cantalapiedra-Hijar G, Martin C. 2022. Individual methane emissions (and other gas flows) are repeatable and their relationships with feed efficiency are similar across two contrasting diets in growing bulls. Animal

Besnard F, Leclerc H, Boussaha M, Grohs C, Jewell N, Pinton A, Barsac H, Jourdain J, Femenia M, Dorso L, Strugnell B, Floyd T, Danchin-Burge C, Guatteo R, Cassart D, Hubin X, Mattalia S, Boichard D, Capitan A. 2022. Detailed analysis of mortality rates in the female progeny of 1001 Holstein bulls allows the discovery of new dominant genetic defects. J Dairy Sci

Besson M, Rombout N, Salou G, Vergnet A, Cariou S, Bruant JS, Izquierdo M, Bestin A, Clota F, Haffray P, Allal F, Vandeputte M. 2022. Potential for genomic selection on feed efficiency in gilthead sea bream (Sparus aurata), based on individual feed conversion ratio, carcass and lipid traits. AQUACULTURE REPORTS. 

Borey M, Bed’Hom B, Bruneau N, Estellé J, Larsen F, Blanc F, Pinard-van der Laan M-H, Dalgaard T, Calenge F. 2022. Caecal microbiota composition of experimental inbred MHC-B lines infected with IBV differs according to genetics and vaccination. Scientific report 

Borges F, Briandet R, Callon C, Champomier-Vergès M-C, Christieans S, Chuzeville S, Denis C, Desmasures N, Desmonts M-H, Feurer C, Leroi F, Leroy S, Mounier J, Passerini D, Pilet M-F, Schlusselhuber M, Stahl V, Strub C, Talon R, Zagorec M. 2022. Contribution of omics to biopreservation: Toward food microbiome engineering Front Microbiol. 

Bouchel D. 2022. La mise en œuvre des réglementations sur l'accès aux ressources génétiques et le partage des avantages (APA) dans les centres de ressources biologiques membres de RARe. Nov'AE 

Calduch-Giner J, Holhorea PG, Ferrer MA, Naya-Català F, Rosell-Moll E , Vega García C, Prunet P, Espmark Å, Leguen I, Kolarevic J, Vega A, Kerneis T, Goardon L, Afonso JM, Pérez-Sánchez J. 2022. Revising the Impact and Prospects of Activity and Ventilation Rate Bio-Loggers for Tracking Welfare and Fish-Environment Interactions in Salmonids and Mediterranean Farmed Fish. Front Marine Science.

Cazals A, Estelle J, Bruneau N, Coville JL, Menanteau P, Rossignol MN, Jardet D, Bevilacqua C, Rau A, Bed'Hom B, Velge P, Calenge F. 2022. Differences in caecal microbiota composition and Salmonella carriage between experimentally infected inbred lines of chickens. Gen Sel Evol.

Cerutti C, Leroux S, Gourichon D, Labrune Y, David I, Zerjal T, Coustham V, Devailly G, Pitel F. 2022. Effects of in-ovo injection of endocrine disruptors and methyltransferase inhibitor on quail growth and egg-laying performances. Animal. 

Chebrout M, Kone MC, Jan HU, Cournut M, Letheule M, Fleurot R, Aguirre-Lavin T, Peynot N, Jouneau A, Beaujean N, Bonnet-Garnier A. 2022. Transcription of rRNA in early mouse embryos promotes chromatin reorganization and expression of major satellite repeats. J CELL SCIENCE.

Conde C, Theze J, Cochard T, Rossignol MN, Fourichon C, Delafosse A, Joly A, Guatteo R, Schibler L, Bannantine JP, Biet F. 2022. Genetic Features of Mycobacterium avium subsp. paratuberculosis Strains Circulating in the West of France Deciphered by Whole-Genome Sequencing. MICROBIOLOGY SPECTRUM. 

Costes V, Chaulot-Talmon A, Sellem E, Perrier JP, Aubert-Frambourg A, Jouneau L, Pontlevoy C, Hozé C, Fritz S, Boussaha M, Le Danvic C, Sanchez MP, Boichard D, Schibler L, Jammes H, Jaffrézic F, Kiefer H. 2022. Predicting male fertility from the sperm methylome: application to 120 bulls with hundreds of artificial insemination records. Clinical Epigenetics. 

Curcio A, van de Walle A, Pechoux C, Abou-Hassan A, Wilhelm C. 2022. In Vivo Assimilation of CuS, Iron Oxide and Iron Oxide@CuS Nanoparticles in Mice: A 6-Month Follow-Up Study. PHARMACEUTICS. 

David I, Ricard A, Huynh-Tran VH, Dekkers JCM, Gilbert H. 2022. Quality of breeding value predictions from longitudinal analyses, with application to residual feed intake in pigs. Gen Sel Evol.

de Verdal H, Haffray P, Douchet V, Vandeputte M. Impact of a divergent selective breeding programme on individual feed conversion ratio in Nile tilapia Oreochromis niloticus measured in groups by video-recording. Aquaculture

De Wolf J, Glorion M, Jouneau L, Estephan J, Leplat JJ, Blanc F, Richard C, Urien C, Roux A, Le Guen M, Journois D, Schwartz-Cornil I, Sage E. 2022. Challenging the Ex Vivo Lung Perfusion Procedure With Continuous Dialysis in a Pig Model. TRANSPLANTATION 

Denis B, Verrier E. 2022. Cinquante ans d’activité de la Société d’Ethnozootechnie : bilan et leçons pour demain. Ethnozootechnie 

Dhorne-Pollet S, Fitzpatrick C, Da Costa B, Bourgon C, Eléouët J-F, Meunier N, Burzio VA, Delmas B, Barrey E.2022. Antisense oligonucleotides targeting ORF1b block replication of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Front Microbiol. 

Druml T, Brem G, Horna M, Ricard A, Grilz-Seger G. DPF3, A Putative Candidate Gene For Melanoma Etiopathogenesis in Gray Horses. JEVS. 

Duclos R, Delanoue E, Dockes AC, Journaux L, Sourdioux M, Bidanel JP. 2022. Targeted genome modification applied to animals: in between controversies. INRA PROD ANIM. 

Ducrocq V, Cadet A, Patry C, van der Westhuizen L, van Wyk JB, Neser FWC. 2022. Two approaches to account for genotype-by-environment interactions for production traits and age at first calving in South African Holstein cattle. Gen Sel Evol. 

Faulconnier Y, Boby C, Coulpier F, Lemoine S, Martin P, Leroux C. 2022. Comparative transcriptome analysis of goat (Capra hircus) adipose tissue reveals physiological regulation of body reserve recovery after the peak of lactation. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. 

Floriot S, Bellutti L, Castille J, Moison P, Messiaen S, Passet B, Boulanger L, Boukadiri A, Tourpin S, Beauvallet C, Vilotte M, Riviere J, Pechoux C, Bertaud M, Vilotte JL, Livera G. 2022. CEP250 is Required for Maintaining Centrosome Cohesion in the Germline and Fertility in Male Mice. Front Cell Dev. 

Gascuel-Odoux C, Lescourret F, Dedieu B, Detang-Dessendre C, Faverdin P, Hazard L, Litrico-Chiarelli I, Petit S, Roques L, Reboud X, Tixier-Boichard M, de Vries H, Caquet T. 2022. A research agenda for scaling up agroecology in European countries. AGRONOMY FOR SUSTAINABLE DEVELOPMENT. 

Gastinel PL, Danchin-Burge C, Denis B, Verrier E L’œuvre et l’héritage de Laurent Avon. 2022. Ethnozootechnie 

Grohs C, Boussaha M, Hozé C, Capitan A. 2022. Rare cases of hernia of the linea alba among TWIST1 haploinsufficient Charolais cattle. Anim Genet

Hauser M, Signer-Hasler H, Kuettel L, Capitan A, Guldbrandtsen B, Hinrichs D, Flury C, Seefried FR, Droegemueller C. 2022. Identification of two new recessive MC1R alleles in red-coloured Evolener cattle and other breeds. Anim Genet. 

Hue-Beauvais C, Bédin K, Robert R, Gardan-Salmon D, Maupin M, Brun N, Aujean E, Jaffrezic F, Simon S, Charlier M, Le Provost F. 2022. Impact of pre-breeding feeding practices on rabbit mammary gland development at mid-pregnancy Peer Community in Animal Science (bioRxiv)

Jorge-Smeding E, Polakof S, Bonnet M, Durand S, Centeno D, Pétéra M, Taussat S, Cantalapiedra-Hijar G. 2022. Untargeted metabolomics confirms the association between plasma branched chain amino acids and residual feed intake in beef heifers. PlosOne. 

Lagarde H, Phocas F, Pouil S, Goardon L, Bideau M, Guyvarc'h F, Labbé L, Dechamp N, Prchal M, Dupont-Nivet M, Lallias D. 2022. Are resistances to acute hyperthermia or hypoxia stress similar and consistent between early and late ages in rainbow trout using isogenic lines ? Aquaculture 

Leduc A, Le Guillou S, Bianchi L, Oliveira Correia L, Gelé M, J. Pires J, Martin P, Leroux C, Le Provost F, Boutinaud M. 2022. Milk proteins as a feed restriction signature indicating the metabolic adaptation of dairy cows. Scientific report.

Lefebvre R, Faverdin P, Barbey S, Jurquet J, Tribout T, Boichard D, Martin P. 2022. Association between body condition genomic values and feed intake, milk production, and body weight in French Holstein cows. J. Dairy Sci 

Lesueur J, Walachowski S, Barbey S, Cebron N, Lefebvre R, Launay F, Boichard D, Germon P, Corbiere F, Foucras G. 2022. Standardized whole blood assay and bead-based cytokine profiling reveal commonalities and diversity of the response to bacteria and TLR ligands in cattle. Front. Immunol. 

Liu S, Gao Y, Canela-Xandri O, Wang S, Yu Y, Cai W, Li B, Xiang R, Chamberlain A.J., Pairo-Castineira E., D'mellow K., Rawlik K, Xia C., Yao Y., Navarro P, Rocha D., Li X., Yan Z., Li C., Rosen B.D., Van Tassell C.P., Vanraden P.M., Zhang S., Ma L., Cole J.B., Liu G.E., Tenesa A., Fang L. 2022. A comprehensive catalogue of regulatory variants in the cattle transcriptome. Nature Genetics 

Mach N, Midoux C, Leclercq S, Pennarun S, Le Moyec L, Rué O, Robert C, Sallé G, Barrey E. 2022. Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes. Comm Biol. 

Mage RJ, Rogel-Gaillard C. 2022. Immunogenetics in the rabbit. The genetics and genomics of the rabbit. Book, Chap. 5 

Magnier J, Druet T, Naves M, Ouvrard M, Raoul S, Janelle J, Moazami-Goudarzi K, Lesnoff M, Tillard E, Gautier M, Flori L. 2022. The genetic history of Mayotte and Madagascar cattle breeds mirrors the complex pattern of human exchanges in Western Indian Ocean. G3.

Malsa J, Courtot E, Boisseau M, Dumont B, Gombault P, Kuzmina TA, Basiaga M, Lluch J, Annonay G, Dhorne-Pollet S, Mach N, Sutra JF, Wimel L, Dubois C, Guégnard F, Serreau D, Lespine A, Sallé G, Fleurance G. 2022. Effect of sainfoin (Onobrychis viciifolia) on cyathostomin eggs excretion, larval development, larval community structure and efficacy of ivermectin treatment in horses. Parasitology.  

Marandel L, Heraud C, Veron V, Laithier J, Marchand M, Quillet E, Callet T, Dupont-Nivet M, Medale F. 2022. A plant-based diet differentially affects the global hepatic methylome in rainbow trout depending on genetic background. EPIGENETICS

Marin M, Rizzotto F, Leguillier V, Pechoux C, Borezee-Durant E, Vidic J. 2022. Naked-eye detection of Staphylococcus aureus in powdered milk and infant formula using gold nanoparticles. JOURNAL OF MICROBIOLOGICAL METHODS 

Marthey S, Delavaud A, Marthey N, Méal C, Tixier-Boichard M. 2022. Présentation du portail d'accès aux ressources biologiques du pilier animal de RARe. Nov'AE 

Martin P, Vinet A, Allart L, Launay F, Dozias D, Maupetit D, Renand G. 2022. Influence of feed restriction and subsequent recovery on lactating Charolais cows. Livestock Science, 264, 105077

Martignon M, Bergheaud V, Buff S, Chuat V, Cottin R, Goussopoulos J, Jardet D, Tixier-Boichard M, Valence F. 2022. Déploiement de Systèmes de Management de la Qualité dans les Centres de Ressources Biologiques de l’Infrastructure de Recherche RARe. Nov'AE 

Mazurier M, Drouaud J, Bahrman N, Rau A, Lejeune-Henaut I, Delbreil B, Legrand S. 2022. Integrated sRNA-seq and RNA-seq Analyses Reveal a microRNA Regulation Network Involved in Cold Response in Pisum sativum L. Genes

Mollandin F., Gilbert H., Croiseau P., Rau A. 2022. Accounting for overlapping annotations in genomic prediction models of complex traits. BMC Bioinformatics, 23, 365. 

Palhière I, Gousseau V, Colleau JJ. 2022. La Sélection à Parenté Minimum Génomique : principes et résultats pour les deux races caprines laitières principales françaises. INRAE Prod Anim. 

Pereira G, Guo YZ, Silva E, Bevilacqua C, Charpigny G, Lopes-da-Costa L, Humblot P. 2022. Progesterone differentially affects the transcriptomic profiles of cow endometrial cell types. BMC Genomics.

Pereira G, Guo YZ, Silva E, Silva MF, Bevilacqua C, Charpigny G, Lopes-da-Costa L, Humblot P. 2022. Subclinical endometritis differentially affects the transcriptomic profiles of endometrial glandular, luminal, and stromal cells of postpartum dairy cows. J. Dairy Sci

Phocas F. 2022. Genotyping, the Usefulness of Imputation to Increase SNP Density, and Imputation Methods and Tools. Chapter 4 in: Complex Trait Prediction. Ahmadi N. and Bartholomé J. (eds), Springer Protocols. 113-138 

Prado E, Eklouh-Molinier C, Enez F, Causeur D, Blay C, Dupont-Nivet M, Labbe L, Petit V, Moreac A, Taupier G, Haffray P, Bugeon J, Corraze G, Nazabal V. 2022. Prediction of fatty acids composition in the rainbow trout Oncorhynchus mykiss by using Raman micro-spectroscopy. Analytica Chimica Acta. 

M. Prchal, J. D'Ambrosio, H. Lagarde, Lallias D, Patrice P, François Y, Poncet C, Desgranges A, Haffray P, Dupont-Nivet M, Phocas F. 2022. Genome-wide association study and genomic prediction of tolerance to acute hypoxia in rainbow trout. Aquaculture

Quéméré P, Denis B, Lauvie A, Verrier E. 2022. Les races en péril : un thème identitaire pour une association lanceuse d’alerte. Ethnozootechnie 

Rau A, Manansala R, Flister MJ, Rui H, Jaffrezic F, Laloe D, Auer PL. 2022. Individualized multi-omic pathway deviation scores using multiple factor analysis. BIOSTATISTICS. 

Rau A, Passet B, Castille J, Daniel-Carlier N, Asset A, Lecardonnel J, Moroldo M, Jaffrézic F, Laloë D, Moazami-Goudarzi K, Vilotte JL. 2022. Potential genetic robustness of Prnp and Sprn double knockout mouse embryos towards ShRNA-lentiviral inoculation. Vet Res. 

Rejasse A, Waeytens J, Deniset-Besseau A, Crapart N, Nielsen-Leroux C, Sandt C. 2022. Plastic biodegradation: Do Galleria mellonella Larvae Bioassimilate Polyethylene? A Spectral Histology Approach Using Isotopic Labeling and Infrared Microspectroscopy Env Sci Tech. 

Restoux G, Rognon X, Vieaud A, Guemene D, Petitjean F, Rouger R, Brard‑Fudulea S, Lubac‑Paye S, Chiron G, Tixier‑Boichard M. 2022. Managing genetic diversity in breeding programs of small populations: the case of French local chicken breeds. Gen Sel Evol 

Rohmer T, Ricard A, David I. 2022. Copula miss-specification in REML multivariate genetic animal model estimation. Gen Sel Evol. 

Rostellato R., Lora I., Promp J., Cassandro M., Ducrocq V., Cozzi G. 2022. Factors affecting true and functional productive lifespan in Italian Holstein-Friesian cows. Italian Journal of Animal Science, 21, 1268–1276, 

Ruet A, Arnould C, Lemarchand J, Parias C, Mach N, Moisan MP, Foury A, Briant C, Lansade L. 2022. Horse welfare: A joint assessment of four categories of behavioural indicators using the AWIN protocol, scan sampling and surveys. ANIMAL WELFARE 

Sanchez MP, Tribout T, Fritz S, Guatteo R, Fourichon C, Schibler L, Delafosse A, Boichard D. 2022. New insights into genetic resistance to paratuberculosis in Holstein cattle via a single-step genomic evaluation. Gen Sel Evol.

Sanchez MP, Tribout T, Fritz S, Wolf V, Laithier C, Brochard M, Boichard D. 2022. Opportunities for genomic selection of cheese-making traits in Montbéliarde cows. J. Dairy Sci.

Senczuk G, Criscione A, Mastrangelo S, Biscarini F, Marletta D, Pilla F, Laloë D, Ciampolini R. 2022. How Geography and Climate Shaped the Genomic Diversity of Italian Local Cattle and Sheep Breeds. Animals. 

Vaiman A., Fritz S., Beauvallet C., Boussaha M., Grohs C., Daniel-Carlier N., Relun A., Boichard D., Vilotte J.L., Duchesne A. 2022. Mutation of MYH3 gene causes recessive cleft palate syndrome in Limousin cattle. Genet Sel Evol. 54:71.

Vandeputte M, Corraze G, Doerflinger J, Enez F, Clota F, Terrier F, Horat M, Larroquet L, Petit V, Haffray P, Skiba-Cassy S, Dupont-Nivet M. 2022. Realised genetic gains on growth, survival, feed conversion ratio and quality traits after ten generations of multi-trait selection in rainbow trout Oncorhynchus mykiss, fed a standard diet or a “future” fish-free and soy-free diet. Aquaculture Reports 

Verma M, Laloe D, Dige MS, De S, Rout PK. 2022. Landscape and bioclimatic diversity of milk protein variability in tropical goats. Small Ruminant Research

Verrier E, Ducos A. 2022. Aspects génétiques de l’évolution de l’élevage : une histoire de temps, de moyens et d’organisation sociale. Bulletin de l’Académie Vétérinaire de France.

Wragg D, Eynard SE, Basso B, Canale-Tabet K, Labarthe E, Bouchez O, Bienefeld K, Bienkowska M, Costa C, Gregorc A, Kryger P, Parejo M, Pinto MA, Bidanel JP, Servin B, Le Conte Y, Vignal A. 2022. Complex population structure and haplotype patterns in the Western European honey bee from sequencing a large panel of haploid drones. Mol Eco Res 

Xiang R, Fang L, Sanchez MP, Cheng H, Zhang Z. 2022. Multi-layered Genome-wide Association and Prediction in Animals. Frontiers in Genetics.