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24, chemin de Borde Rouge -Auzeville - CS52627 31326 Castanet Tolosan cedex - France

Last update: May 2021

Menu Logo Principal AgroParisTech Université Paris-Saclay SAPS - Sciences Animales Paris-Saclay


GABI : Génétique Animale et Biologie IntégrativeUnité Mixte de Recherche INRA - AgroParisTech

Publications 2021

Recent publications 

De Oliveira J, Chadili E, Turies C, Maillot-Maréchal E, Brion F, Cousin X, Hinfray N. 2021. A comparison of behavioral and reproductive parameters between wild-type, transgenic and mutant zebrafish: Could they all be considered the same “zebrafish” for reglementary assays on endocrine disruption? Comp Biochem Phys Cl. 239, 108879 GenAqua

Mattalia S, Brochard M, Burlot T. 2021. Formation pour les opérateurs de la sélection: évolutions des pratiques et anticipation des besoins. Ethnozootechnie. 109, 19-27 G2B

Publications 2021

Akian DD, Yao K, Parmentier E, Clota F, Baroiller JF, Begout ML. 2021. Familiarity reduces aggression but does not modify acoustic communication in pairs of Nile tilapia (Oreochromis niloticus) and black-chinned tilapia (Sarotherodon melanotheron). J Fish Biol. 

Al Kalaldeh M, Swaminathan M, Gaundare Y, Joshi S, Aliloo H, Strucken EM, Ducrocq V, Gibson JP. 2021. Genomic evaluation of milk yield in a smallholder crossbred dairy production system in India.  Genet Sel Evol. 53, 73 

Allais-Bonnet A., Hintermann A., Deloche M.C., Cornette R., Bardou P., Naval-Sanchez M., Pinton A., Haruda A., Grohs C., Zakany J., Bigi D., Medugorac I., Putelat O., Greyvenstein O., Hadfield T., Ben Jemaa S., Bunevski G., Menzi F., Hirter N., Paris J.M., Hedges J., Palhiere I., Rupp R., Lenstra J.A., Gidney L., Lesur J., Schafberg R., Stache M., Wandhammer M.D., Arbogast R.M., Guintard C., Blin A., Boukadiri A., Rivière J., Esquerré D., Donnadieu C., Danchin-Burge C., Reich C.M., Riley D.G., van Marle-Koster E., Cockett N., Hayes B.J., Drögemüller C., Kijas J., Pailhoux E., Tosser-Klopp G., Duboule D., Capitan A. 2021. Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae. Molecular Biology and Evolution, 38, 2260-2272

Ali S, Xia Q, Muhammad T, Liu LQ, Meng XY, Bars-Cortina D, Khan AA, Huang YH, Dong L. 2021. Glioblastoma Therapy: Rationale for a Mesenchymal Stem Cell-based Vehicle to Carry Recombinant Viruses. Stem Cell Rev Report.

Barsoe S, Allal F, Vergnet A, Vandeputte M, Olesen NJ, Schmidt JG, Larsen CA, Cuenca A, Vendramin N. 2021. Different survival of three populations of European sea bass (Dicentrarchus labrax) following challenge with two variants of nervous necrosis virus (NNV). Aquaculture Report. 19, 100621

Blanc M, Antczak P, Cousin X, Grunau C, Scherbak N,Rüegg J,Keiter SH. 2021. The insecticide permethrin induces transgenerational behavioral changes linked to transcriptomic and epigenetic alterations in zebrafish (Danio rerio). Sci Total Environ. 779, 146404

Blay C, Haffray P, D’Ambrosio J, Prado E, Dechamp N, Nazabal V, Bugeon J, Enez F, Causeur D, Eklouh-Molinier C, Petit V, Phocas F, Corraze G, Dupont-Nivet M. 2021. Genetic architecture and genomic selection of fatty acid composition predicted by Raman spectroscopy in rainbow trout. BMC Genomics. 22 

Beaumont M, Blanc F, Cherbuy C, Egidy G, Giufra E, Lacroix‑Lamandé S, Wiedemann A. 2021. Intestinal organoids in farm animals. Vet Res. 52, 33

Ben Abdelkrim A, Puillet L, Gomes P, Martin O. 2021. Lactation curve model with explicit representation of perturbations as a phenotyping tool for dairy livestock precision farming. Animal. 15, 100074

Ben Abdelkrim A, Tribout T, Martin O, Boichard D, Ducrocq V, Friggens NC. 2021. Exploring simultaneous perturbation profiles in milk yield and body weight reveals a diversity of animal responses and new opportunities to identify resilience proxies. J Dairy Sci. 104, 459-470

Ben Braiek M, Fabre S, Hoze C, Astruc JM, Moreno-Romieux C. 2021. Identification of homozygous haplotypes carrying putative recessive lethal mutations compromising fertility traits in French Lacaune dairy sheep. Genet Sel Evol. 53, 41.

Ben-Jemaa S, Senczuk G, Ciani E, Ciampolini R, Catillo G, Boussaha M, Pilla F, Portolano B, Mastrangelo S. 2021. Genome-wide analysis reveals selection signatures involved in meat traits and local adaptation in semi-feral Maremmana cattle. Front Genet. 12, 675569

Bernard M, Rué O, Mariadassou M, Pascal G. 2021. FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers. Brief Bioinfo. bbab318.

Bérodier M, Berg P, Meuwissen T, Boichard D, Brochard M,  Ducrocq V. 2021. Improved dairy cattle mating plans at herd level using genomic information. Animal. 15, 10016

Bestin A, Brunel O, Malledant A, Debeuf B, Benoit P, Mahla R, Chapuis H, Guémené D, Vandeputte M, Haffray P.  2021. Genetic parameters of caviar yield, color, size and firmness using parentage assignment in an octoploid fish species, the Siberian sturgeon Acipenser baerii. Aquacul. 540, 736725.

Billa PA , Faulconnier Y, Ye T, Bourdon C ,Pires JAA, Leroux C. 2021. Nutrigenomic analyses reveal miRNAs and mRNAs affected by feed restriction in the mammary gland of midlactation dairy cows. Plos One. 16, e0248680

Blanc F,  Maroilley T,  Revilla M, Lemonnier G, Leplat JJ,  Billon Y, Ravon L, Bouchez O, Bidanel JP, Bed’Hom B, Pinard‑van der Laan MH, Estellé J, Rogel‑Gaillard C. 2021. Influence of genetics and the pre-vaccination blood transcriptome on the variability of antibody levels after vaccination against Mycoplasma hyopneumoniae in pigs. Genet Sel Evol. 53, 24

Blanc M, Alfonso S, Begout ML, Barrachina C, Hyotylainen T, Keiter SH, Cousin X. 2021. An environmentally relevant mixture of polychlorinated biphenyls (PCBs) and polybrominated diphenylethers (PBDEs) disrupts mitochondrial function, lipid metabolism and neurotransmission in the brain of exposed zebrafish and their unexposed F2 offspring. Sci Total Environ. 754, 142097

Blay C, Haffray P,Bugeon J, D’Ambrosio J, Dechamp N, Collewet G, Enez F, Petit V, Cousin X, Corraze G, Phocas F, Dupont-Nivet M. 2021. Genetic Parameters and Genome-Wide Association Studies of Quality Traits Characterised Using Imaging Technologies in Rainbow Trout, Oncorhynchus mykiss. Front Genet. 12, 639223

Boitard S, Paris C, Sevane N, Servin B, Bazi-Kabbaj K, Dunner S. 2021. Gene Banks as Reservoirs to Detect Recent Selection: The Example of the Asturiana de los Valles Bovine Breed. Front Genet. 12, 575405

Bourdon C, Boussaha M, Bardou P, Sanchez MP, Le Guillou S, Tribout T, Larroque H, Boichard D, Rupp R, Le Provost F, Tosser-Klopp G. 2021. In silico identification of variations in microRNAs with a potential impact on dairy traits using whole ruminant genome SNP datasets. Scient Report. 11, 19580

Borey M, Blanc F, Lemonnier G, Leplat JJ, Jardet D, Rossignol MN, Ravon L, Billon Y, Bernard M, Estelle J, Rogel-Gaillard C. 2021. Links between fecal microbiota and the response to vaccination against influenza A virus in pigs. NPJ Vaccines. 6, 92

Boudry P, Allal F, Aslam ML, Bargelloni L, Bean TP, Brard-Fudulea S, Brieuc MSO, Calboli FCF, Gilbey J, Haffray P, Lamy JB, Morvezen R, Purcell C, Prodohl PA, Vandeputte M, Waldbieser GC, Sonesson AK, Houston RD. 2021. Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of the Sea (ICES) member countries. Aquaculture Report. 20, 100700

Boufroura FZ, Tomkiewicz‑Raulet C, Poindessous V, Castille J, Vilotte JL,  Bastin J, Mouillet‑Richard S, Djouadi F. 2021. Cellular prion protein dysfunction in a prototypical inherited metabolic myopathy. Cell Mol Life Sci. 78, 2157-2167

Callet T, Dupont-Nivet M, Danion M, Burel C, Cluzeaud M, Surget A, Aguirre P, Kerneis T, Labbe L, Panserat S, Quillet E, Geurden I, Skiba-Cassy S, Medale F. 2021. Why Do Some Rainbow Trout Genotypes Grow Better With a Complete Plant-Based Diet? Transcriptomic and Physiological Analyses on Three Isogenic Lines. Front Physiol. 12, 732321

Castille J, Passet B, Makhzami S, Vilotte M, Moazami-Goudarzi K, Truchet S, Daniel-Carlier N, Gaillard AL, Andréoletti O, Vaiman D, Beauvallet C, Vaiman A, Floriot S, Calvel P, Mouillet-Richard S, Duchesne A, Béringue V, Vilotte JL. 2021. Co-invalidation of Prnp and Sprn in FVB/N mice affects reproductive performances and highlight complex biological relationship between PrP and Shadoo. Biochem Biophys Res Commun. 551, 1-6

Castro R, Navelsaker S, Collet B, Jouneau L, Bochet P, Quillet E, Evensen O, Sunyer JO, Fillatreau S, Bruhns P, Rose T, Huetz F, Boudinot P. 2021. Cutting Edge: Neutralizing Public Antibody Responses Are an Ancient Form of Defense Conserved in Fish and Mammals. J Immunol. 207, 371-375 

Chadourne M, Poumerol E, Jouneau L, Passet B, Castille J, Sellem E, Pailhoux E, Mandon-Pepin B. 2021. Structural and Functional Characterization of a Testicular Long Non-coding RNA (4930463O16Rik) Identified in the Meiotic Arrest of the Mouse Topaz1(-/-) Testes. Front Cell Dev Biol. 9, 700290

Chamberlain AJ, Cheng HH, Giuffra E, Kuehn C, Tuggle CK, Zhou HJ. 2021. Editorial: Functional Annotation of Animal Genomes. Front Genet. 12, 

Chankeaw W, Lignier S, Richard C, Ntallaris T, Raliou M, Guo YZ, Plassard D, Bevilacqua C, Sandra O, Andersson G, Humblot P, Charpigny G. 2021 . Analysis of the transcriptome of bovine endometrial cells isolated by laser micro-dissection (1): specific signatures of stromal, glandular and luminal epithelial cells. BMC Genomics. 22, 451

Chankeaw W, Lignier S, Richard C, Ntallaris T, Raliou M, Guo YZ, Plassard D, Bevilacqua C, Sandra O, Andersson G, Humblot P, Charpigny G. 2021. Analysis of the transcriptome of bovine endometrial cells isolated by laser micro-dissection (2): impacts of post-partum negative energy balance on stromal, glandular and luminal epithelial cells. BMC Genomics. 22, 450

Charvolin-Lemaire E, Laloë D. 2021. Evolution du concept de race et sa pertinence au début du XXIe siècle. Ethnozootechnie. 109, 47-52

Conde C, Branger M, Cochard T, Rossignol MN, Fourichon C, Delafosse A, Davergne A, Joly A, Ngwa-Mbot D, Journaux L, Guatteo R, Schibler L, Biet F. 2021. Draft Genome Sequences of 142 Mycobacterium avium subsp. paratuberculosis Strains Isolated from Naturally Infected Dairy Cattle. Microbiology Resource Announcements. 10, e00697-21

Consentino L, Rejasse A, Crapart N, Bevilacqua C, Nielsen-LeRoux C. 2021. Laser capture microdissection to study Bacillus cereus iron homeostasis gene expression during Galleria mellonella in vivo gut colonization. Virulence. 12, 2104-2121

Cormier B, Gambardella C, Tato T, Perdriat Q, Costa E, Veclin C, Le Bihanic F, Grassl B, Dubocq, Karrman A, Van Arkel K,  Lemoine S, Lagarde F, Morin B, Garaventa F, Faimali M, Cousin X, Begout ML, Beiras R, Cachot J. 2021. Chemicals sorbed to environmental microplastics are toxic to early life stages of aquatic organisms. Ecotoxicol Environ Saf. 208, 111665

Cormier B, Le Bihanic F, Cabar M, Crebassa JC, Blanc M, Larsson M, Dubocq F, Yeung L, Clérandeau C, Keiter SH, Cachot J, Bégout ML, Cousin X. 2021. Chronic feeding exposure to virgin and spiked microplastics disrupts essential biological functions in teleost fish. J Haz Mat. 125626

Cuyabano BCD, Rovere G, Lim D, Kim TH, Lee HK, Lee SH, Gondro C. 2021. GPS Coordinates for Modelling Correlated Herd Effects in Genomic Prediction Models Applied to Hanwoo Beef Cattle. Animals. 11, 2050

Davaine C, Hadadi E, Taylor W, Bennaceur-Griscelli A, Acloque H. 2021. Inducing Sequential Cycles of Epithelial-Mesenchymal and Mesenchymal-Epithelial Transitions in Mammary Epithelial Cells. Methods Mol Biol. 2179, 341-351

David GM, López-García P, Moreira D, Alric B, Deschamps P, Bertolino P, Restoux G, Rochelle-Newall E, Thébault E, Simon M, Jardillier L. 2021.  Small freshwater ecosystems with dissimilar microbial communities exhibit similar temporal patterns. Mol Ecol. 30, 2162–2177

Degalez F, Jehl F, Muret K, Bernard M, Lecerf F, Lagoutte L, Désert C, Pitel F, Klopp C, Lagarrigue S. 2021. Watch Out for a Second SNP: Focus on Multi-Nucleotide Variants in Coding Regions and Rescued Stop-Gained. Front Genet. 12, 659287

De Oliveira J, Chadili E, Turies C, Brion F, Cousin X, Hinfray N. 2021. A comparison of behavioral and reproductive parameters between wild-type, transgenic and mutant zebrafish: Could they all be considered the same "zebrafish" for reglementary assays on endocrine disruption? Comp Biochem Physiol C Toxicol Pharmacol. 239, 108879

De Oliveira Silva R, Gardyn OC, Hiemstra SJ,  Marques JGO, Tixier-Boichard M, Moran, D. 2021. Ex situ and in situ data for endangered livestock breeds in Spain. Data in Brief, 35, 106805

Destoumieux-Garzón D, Bonnet P, Teplitsky C, Criscuolo F, Henry PY, Mazurais D, Prunet P, Salvat G, Usseglio-Polatera P, Verrier E, Friggens N. 2021. OneARK: Strengthening the links between animal production science and animal ecology. Animal, 15: 100053

DeVogel N, Auer PL,  Manansala R, Rau A, Wang T. 2021. A unified linear mixed model for familial relatedness and population structure in genetic association studies. Genet Epidemiol. 45, 305-315

Dhorne-Pollet S, Pollet N, Barrey E. 2021. A New Method for Sequencing the Mitochondrial Genome by Using Long Read Technology. Meth Mol Biol. 2277, 331

Douet JY, Huor A, Cassard H, Lugan S, Aron N, Mesic C, Vilette D, Barrio T, Streichenberger N, Perret-Liaudet A, Delisle MB, Peran P, Deslys JP, Comoy E, Vilotte JL, Goudarzi K, Beringue V, Barria MA, Ritchie DL, Ironside JW, Andreoletti O. 2021. Prion strains associated with iatrogenic CJD in French and UK human growth hormone recipients. Acta Neuropath Com. 9, 145

Druml T, Brem G, Velie B, Lindgren G, Horna M, Ricard A, Grilz-Seger G. 2021. Equine vitiligo-like depigmentation in grey horses is related to genes involved in immune response and tumor metastasis. BMC Vet Res. 17. 

Ducrot C, Barrio MB, Boissy A, Casabianca F, Pinard-van der Laan MH, Maillet I. 2021. Comment faciliter la construction et la conduite des projets interdisciplinaires : retour d’expérience d’un programme de recherche sur la gestion intégrée de la santé des animaux en élevage. Nat Sci Soc 29 (2) 213-222 (2021). 29, 213-222

Dugué M, Dumont Saint Priest B, Crichan H, Danvy S, Ricard A. 2021. Genomic correlations between the gaits of young horses measured by accelerometry and functional longevity in jumping competition. Front Genet. 12, 619947

Edholm ES, Fenton CG, Mondot S, Paulssen RH, Lefranc MP, Boudinot P, Magadan S. 2021. Profiling the T Cell Receptor Alpha/Delta Locus in Salmonids. Front Immun. 12 

El Hou A, Rocha D, Venot E, Blanquet V, Philippe R. 2021. Long-range linkage disequilibrium in French beef cattle breeds. Genet Sel Evol, 53, 63

Escouflaire C, Capitan A. 2021. Analysis of pedigree data and whole-genome sequences in 12 cattle breeds reveals extremely low within-breed Y-chromosome diversity. Anim Genet. 52, 725-729

Faggion S, Vandeputte M, Vergnet A, Clota F, Blanc M-O, Sanchez P, Ruelle F, Allal F. 2021. Sex dimorphism in European sea bass (Dicentrarchus labrax L.): New insights into sex-related growth patterns during very early life stages. Plos One. 16, e0239791

Faure MC, Khoueiry R, Quanico J, Acloque H, Guerquin MJ, Bertoldo MJ, Chevaleyre C, Rame C, Fournier I, Salzet M, Dupont J, Froment P In Utero. 2021. Exposure to Metformin Reduces the Fertility of Male Offspring in Adulthood. Front Endocr 12 

Femenia M, Charles M, Boulling A, Rocha D. 2021. Identification and characterisation of mitochondrial sequences integrated into the ovine nuclear genome. Anim Genet. 52, 556-559

Floriot S, Duchesne D, Grohs C, Hozé C, Deloche MC, Fayolle G, Vilotte JL, Boichard D, Fritz S,  Boussaha M. 2021. A missense mutation in the FZD7 gene is associated with dilution of the red areas of the coat in Montbéliarde cattle. Anim Genet. 52, 351-355.

Geffroy B, Besson M, Sanchez-Baizan N, Clota F, Goikoetxea A, Sadoul B, Ruelle F, Blanc MO, Parrinello H, Hermet S, Blondeau-Bidet E, Pratlong M, Piferrer F, Vandeputte M, Allal F. 2021. Unraveling the genotype by environment interaction in a thermosensitive fish with a polygenic sex determination system. PNAS 

Gefroy B, Gesto M, Clota F, Aerts J, Darias MF, Blanc M-O, Ruelle F, Allal F, Vandeputte M. 2021. Parental selection for growth and early‑life low stocking density increase the female‑to‑male ratio in European sea bass. Scient Report. 11, 13620

Griot R, Allal F, Phocas F, Brard-Fudulea S, Morvezen R, Bestin A, Haffray P, François Y, Morin T, Poncet C, Vergnet A, Cariou S, Brunier J, Bruant JS, Peyrou B, Gagnaire PA, Vandeputte M. 2021. Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip. Aquaculture. 530, 735930

Griot R, Allal F, Phocas F, Brard-Fudulea S, Morvezen R, Haffray P, François Y, Morin T, Bestin A, Bruant J-S, Cariou S, Peyrou B, Brunier J, Vandeputte M. 2021. Optimization of Genomic Selection to Improve Disease Resistance in Two Marine Fishes, the European Sea Bass (Dicentrarchus labrax) and the Gilthead Sea Bream (Sparus aurata). Front Genet. 12, 665920

Guarnido-Lopez P, Ortigues-Marty I, Taussat S, Fossaert C, Renand G, Cantalapiedra-Hijar G. 2021. Plasma proteins delta N-15 vs plasma urea as candidate biomarkers of between-animal variations of feed efficiency in beef cattle: Phenotypic and genetic evaluation. Animal. 15, 100318

Hadadi E, Acloque H. 2021. Role of circadian rhythm disorders on EMT and tumour-immune interactions in endocrine-related cancers. Endocr Relat Cancer. 28, R67-R80

Hadadi E, Acloque H. 2021. Effets des altérations du rythme circadien sur l’évolution du cancer du sein. Med Science. 37, 538-541

Hue-Beauvais C, Faulconnier Y, Charlier M, Leroux C. 2021. Nutritional Regulation of Mammary Gland Development and Milk Synthesis in Animal Models and Dairy Species. Genes. 12, 523

Hulot A, Laloë D, Jaffrézic F. 2021. A unified framework for the integration of multiple hierarchical clusterings or networks from multi-source data. BMC Bioinformatics. 22, 392

Hurtaud C, Chaabouni R, Resmond R, Miranda G, Graulet B, Morinière C. 2021. Caractérisation du lait de deux races locales de vaches: la Bretonne Pie Noir et la Froment du Léon. INRAE Prod Anim. 34, 29- 46

Ivanova E, Le Guillou S, Hue-Beauvais C, Le Provost F. 2021. Epigenetics: New Insights into Mammary Gland Biology. Genes. 12, 231

Jehl F, Degalez F, Bernard M, Lecerf F, Lagoutte L, Désert C, Coulée M, Bouchez O, Leroux S, Abasht B, Tixier-Boichard M, Bed’hom B, Burlot T, Gourichon D, Bardou P, Acloque H, Foissac S, Djebali S, Giuffra E, Zerjal T, Pitel F, Klopp C, Lagarrigue S. 2021. RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species. Front Genet. 12, 655707

Jorge-Smeding E, Bonnet M, Renand G, Taussat S, Graulet B, Ortigues-Marty I, Cantalapiedra-Hijar G. 2021. Common and diet-specific metabolic pathways underlying residual feed intake in fattening Charolais yearling bulls. Sci Rep 

Karaman E, Su G, Croue I, Lund MS. 2021. Genomic prediction using a reference population of multiple pure breeds and admixed individuals. Genet Sel Evol. 53, 46 

Kistler T, Basso B, Phocas F. 2021. A simulation study of a honeybee breeding scheme accounting for polyandry, direct and maternal effects on colony performance. Genet Sel Evol. 53, 71

Lallias D, Bernard M, Ciobotaru C, Dechamp N, Labbé L, Goardon L, Le Calvez JM, Bideau M,Fricot A, Prézelin A, Charles M, Moroldo M, Cousin X, Bouchez O, Roulet A, Quillet E,  Dupont-Nivet M. 2021. Sources of variation of DNA methylation in rainbow trout: combined effects of temperature and genetic background. Epigenetics. 16, 1031-1052

Lefebvre R, Larroque H, Barbey S, Gallard Y, Colleau JJ, Lainé AL, Boichard D, Martin P. 2021. Genome-wide association study for age at puberty and resumption of cyclicity in a crossbred dairy cattle population. J. Dairy Sci. 104, 5794-5804

Le Ribeuz H, To L, Ghigna MR, Martin C, Nagaraj C, Dreano E, Rucker-Martin C, Girerd B, Bouligand JM, Pechoux C, Lambert M, Boet A, Issard J, Mercier O, Hoetzenecker K, Manoury B, Becq F, Burgel PR, Cottart CH, Olschewski A, Sermet-Gaudelus I, Perros F, Humbert M, Montani D, Antigny F. 2021. Involvement of CFTR in the pathogenesis of pulmonary arterial hypertension. EUROPEAN RESPIRATORY JOURNAL, 58 

Leroy G, Verrier E. 2021. Contribution des ressources génétiques animales aux services écosystémiques liés au développement territorial. Essais. 6, 79-87

López-García A, Benítez R, Núñez Y, Gómez-Izquierdo E, de Mercado E, García-Casco JM, González-Recio O, López-Bote C, Estellé J, Óvilo C. 2021. Influence of genetic background and dietary oleic acid on gut microbiota composition in Duroc and Iberian pigs. Plos One. 16, e0251804

Lu J, Le Hir R, Gomez-Paez D-M, Coen O, Pechoux C, Jasinski S, Magnani E. 2021. The nucellus: between cell elimination and sugar transport. Plant Physiol. 185, 478-490

Mach N, Baranowski E, Nouvel LX, Citti C. 2021. The Airway Pathobiome in Complex Respiratory Diseases: A Perspective in Domestic Animals. Front Cell Infect Microbiom. 11, 583600

Mach N, Lansade L, Bars‑Cortina D ,Dhorne‑Pollet S, Foury A, Moisan MP, Ruet A. 2021. Gut microbiota resilience in horse athletes following holidays out to pasture. Sci Rep. 11, 5007

Mach N, Moroldo M, Rau A, Lecardonnel J, Le Moyec L, Robert C, Barrey E. 2021. Understanding the Holobiont: Crosstalk Between Gut Microbiota and Mitochondria During Long Exercise in Horse. Front. Mol. Biosci.  8, 656204

Malkmus J, Martins LR, Jhanwar S, Kircher B, Palacio V, Sheth R, Leal F, Duchesne A, Lopez-Rios J, Peterson KA, Reinhardt R, Onimaru K, Cohn MJ, Zuniga A, Zeller R. 2021. Spatial regulation by multiple Gremlin1 enhancers provides digit development with cis-regulatory robustness and evolutionary plasticity. Nature Comm. 12, 5557

Mariadassou M, Suez M, Sathyakumar S, Vignal A, Arca M, Nicolas P, Faraut T, Esquerré D, Nishibori M, Vieaud A, Chen CF, Manh Pham H, Roman Y, Hospital F, Zerjal T, Rognon X, Tixier-Boichard M. 2021. Unraveling the history of the genus Gallus through whole genome sequencing. Mol Phylogenet Evol. 158, 107044

Martin P, Ducrocq V, Fischer A, Friggens NC. 2021. Combining datasets in a dynamic residual feed intake model and comparison with linear model results in lactating Holstein cattle. Animal. 15

Martin P, Ducrocq V, Faverdin P, Friggens NC. 2021. Disentangling residual feed intake—Insights and approaches to make it more fit for purpose in the modern context. J Dairy Sci. 104, 6329-6342

Martin P, Ducrocq V, Gordo DGM, Friggens NC. 2021. A new method to estimate residual feed intake in dairy cattle using time series data. Animal, 15, 100101

Martin P, Vinet A, Denis C, Grohs C, Chanteloup L, Dozias D, Maupetit D, Sapa J, Renand G, Blanc F. 2021. Determination of immunoglobulin concentrations and genetic parameters for colostrum and calf serum in Charolais animals. J Dairy Sci. 104, 3240–3249

Mesbah-Uddin M, Guldbrandtsen B, Capitan A, Lund MS, Boichard D, Sahana G. 2021. Genome-wide association study with imputed whole-genome sequence variants including large deletions for female fertility in 3 Nordic dairy cattle breeds. J. Dairy Sci. 105 

Moazami-Goudarzi K, Andreoletti O, Vilotte JL, Beringue V. 2021. Review on PRNP genetics and susceptibility to chronic wasting disease of Cervidae. Vet Research. 52, 128 

Mollandin F, Rau A, Croiseau P. 2021. An evaluation of the predictive and mapping power of the BayesR model for genomic prediction. G3, jkab225

Mollandin F, Rau A, Croiseau P. 2021. Evaluating the Interpretability of SNP Effect Size Classes in Bayesian Genomic Prediction Models. Hum Heredity, 85-86

Mompart F, Kamgoue A, Lahbib-Mansais Y, Robelin D, Bonnet A, Rogel-Gaillard C, Kocanova S, Yerle-Bouissou M. 2021. The 3D nuclear conformation of the major histocompatibility complex changes upon cell activation both in porcine and human macrophages. BMC Mol Cell Biol. 22, 45

Niel R, Le Moyec L, Launay T, Mille-Hamard L, Triba MN, Maciejak O, Billat VL, Momken I. 2021. Physical performance level in sarcomeric mitochondria creatine kinase knockout mouse model throughout ageing. Exp Gerontol. 46, 111246

Noyer M, Reoyo-Prats B, Aubert D, Bernard M, Verneau O, Palacios C. 2021. Corrrigendum: Particle-attached riverine bacteriome shifts in a pollutant-resistant and pathogenic community during a Mediterranean extreme storm event. Science Total Env. 732, 139047

Pan Q, Feron R, Jouanno E, Darras H, Herpin A, Koop B, Rondeau E, Goetz FW, Larson WA, Bernatchez L, Tringali M, Curran SS, Saillant E, Denys GPJ, von Hippel FA, Chen S, Lopez JA, Verreycken H, Ocalewicz K, Guyomard R, Eche C, Lluch J, Roques C, Hu H, Tabor R, DeHaan P, Nichols KM, Journot L, Parrinello H, Klopp C, Interesova EA, Trifonov V, Schartl M, Postlethwait J, Guiguen Y. 2021. The rise and fall of the ancient northern pike master sex-determining gene. eLife. 10, e62858

Paul K, D'Ambrosio J, Phocas F. 2021. Temporal and region-specific variations in genome-wide inbreeding effects on female size and reproduction traits of rainbow trout. Evolutionary Applications 

Prakoso VA, Pouil S, Cahyanti W, Sundari S, Arifin OZ, Subagja J, Kristanto AH, Slembrouck J. 2021. Fluctuating temperature regime impairs growth in giant gourami (Osphronemus goramy) larvae. Aquaculture, 539, 736606

Puillet L, Ducrocq V, Friggens NC, Amer PR. 2021. Exploring underlying drivers of genotype by environment interactions in feed efficiency traits for dairy cattle with a mechanistic model involving energy acquisition and allocation. J Dairy Sci. 24: 5805-5816

Ramírez‑Ayala LC, Rocha D, Ramos‑Onsins SE, Leno‑Colorado J, Charles M, Bouchez O, Rodríguez‑Valera Y, Pérez‑Enciso, M, Ramayo‑Caldas Y. 2021. Whole‑genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions. Genet Sel Evol. 53, 3

Rau A, Manansala R, Flister MJ, Rui H, Jaffrézzic F, Laloë D, Auer PL. 2021. Individualized multi-omic pathway deviation scores using multiple factor analysis. Biostatistics. kxaa029.

Rejasse A, Waeytens J, Deniset-Besseau A, Crapart N, Nielsen-Leroux C, Sandt C. 2021. Plastic biodegradation: Do Galleria mellonella Larvae Bioassimilate Polyethylene? A Spectral Histology Approach Using Isotopic Labeling and Infrared Microspectroscopy. Env Sci Tech

Ricard A, Duluard A. 2021. Genomic analysis of gaits and racing performance of the French trotter. J Anim Breed Genet. 138, 204-222

Rodde C, de Verdal H, Vandeputte M, Allal F, Nati J, Besson M, Blasco FR, Benzie JAH, McKenzie DJ. 2021. An investigation of links between metabolic rate and feed efficiency in European sea bass Dicentrarchus labrax. J Anim Sci. 99, skab152

Rogel-Gaillard C. 2021. Evolutions de la recherche en génétique animale et anticipation des besoins de formation. Ethnozootechnie. 109, 29-40

Rognon X, Heams T, Ducos A, Charpentier R, Magnol L, Restoux G, Rigal J, Verrier E. 2021. Evolutions et perspectives des formations pour la génétique et la sélection animale. Ethnozootechnie. 109, 11-18

Rohmer T, Ricard A, David I. 2021. Assessing the Impact of the Non-Gaussian Dependence Structure in the REML Estimation of the Multivariate Genetic Model. Hum Hered,  85, 90

Rostellato R, Promp J, Leclerc H, Mattalia S, Friggens NC, Boichard D, Ducrocq V. 2021. Influence of production, reproduction, morphology and health traits on true and functional longevity in French dairy cattle. J Dairy Sci

Sadoul B, Alfonso S, Cousin X, Prunet P, Begout ML, Leguen I. 2021. Global assessment of the response to chronic stress in European sea bass. Aquaculture. 544, 737072

Sanchez MP, Rocha D, Charles M, Boussaha M, Hozé C, Brochard M, Delacroix-Buchet A, Grosperrin P, Boichard D. 2021. Sequence-based GWAS and post-GWAS analyses reveal a key role of SLC37A1 and ANKH genes and gene regulatory regions on bovine milk minerals. Sci Rep. 11, 7537

Sardi AE, Begout ML, Cousin X, Labadie P, Loizeau V, Budzinski H. 2021. A review of the effects of contamination and temperature in Solea solea larvae. Modeling perspectives in the context of climate change. J Sea Res. 176, 102101 

Schwochow D, Bornelöv S, Jiang T, Li J, Gourichon D, Bed’Hom B, DorshorstBJ, Chuong, C-M, Tixier-Boichard M, Andersson L. 2021. The feather pattern autosomal barring in chicken is strongly associated with segregation at the MC1R locus. Pigm cell Melanoma Res

Sellem E, Marthey S, Rau A, Jouneau L, Bonnet A, Le Danvic C, Guyonnet B, Kiefer H, Jammes H, Schibler L. 2021. Dynamics of cattle sperm sncRNAs during maturation, from testis to ejaculated sperm. Epigenet Chrom. 14, 24

Silva RD, Gardyn OC, Hiemstra SJ, Marques JGO, Tixier-Boichard M, Moran, D. 2021. Rationalizing ex situ collection of reproductive materials for endangered livestock breed conservation. Ecol Econ. 181, 106916

Tixier-Boichard M, Fabre S, Dhorne-Pollet S, Goubil A, Acloque H, Vincent-Naulleau S, Ross P, Wang Y, Chanthavixay G, Cheng H, Ernst C, Leesburg V, Giuffra E, Zhou H, the Collaborative Working Group.  2021. Tissue Resources for the Functional Annotation of Animal Genomes. Front Genet. 12, 666265

Vandeputte M, Bestin A, Fauchet L, Allamellou JM, Bosc S, Menchi o, Haffray P. 2021. Can we identify wild-born salmon from parentage assignment data? A case study in the Garonne-Dordogne rivers salmon restoration programme in France. Aquat Living Resour. 34, 7

Verrier E, Markey L, Lauvie A. 2021. Valorisation des races animales locales par des produits liés à leur territoire : cinq leçons tirées de cas variés en France. Essais. 6, 35-45

Verrier E, Rognon X, Patin S, Del Porto P. 2021. L'héritage de Jacques Bougler. Ethnozootechnie. 109, 7-10

Vidament M, Lansade L, Danvy S, Saint Priest BD, Sabbagh M, Ricard A. 2021. Personality in young horses and ponies evaluated during breeding shows: Phenotypic link with jumping competition results. J Vet Behavior. 44, 1-11

Vinet A, Bouyer C, Forestier L, Oulmouden A, Blanquet V, Picard B, Cassar-Malek I, Bonnet M, Rocha D, Renand G. 2021. The Blonde d’Aquitaine T3811>G3811 mutation in the myostatin gene: association with growth, carcass, and muscle phenotypes in veal calves. J Anim Sci. 99, skab039

Zened A, Forano E, Delbes C, Verdier-Metz I, Morgavi D, Popova M, Ramayo-Caldas Y, Bergonier D, Meynadier A, Marie-Etancelin C. 2021. Les microbiotes des ruminants : état des lieux de la recherche et impacts des microbiotes sur les performances et la santé des animaux. INRAE Prod Anim. 33, 249-260 

Zerjal T, Härtle S, Gourichon D, Guillory V, Bruneau N, Laloë D, Pinard‑van der Laan M-H, Trapp S, Bed’hom B, Quéré P. 2021. Assessment of trade-ofs between feed efciency, growth-related traits, and immune activity in experimental lines of layer chickens. Genet Sel Evol. 53, 44

Zhao JF, Prchal M, Kause A, Vandeputte M, Gela D, Kroupova HK, Piackova V, Sauer P, Steinbach C, Allamellou JM, Palaiokostas C, Houston RD, Kocour M. 2021. The role of energy reserves in common carp performance inferred from phenotypic and genetic parameters. Aquaculture. 541, 736799