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Last update: May 2021

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  • Microbial and functional characterization of granulated sludge from full-scale UASB thermophilic reactor applied to sugarcane vinasse treatment. Camargo F.P, Sakamoto I.K, Delforno T.P, Midoux C, Duarte I.C.S, Silva E.L, Bize A, Varesche M.B.A. Environmental Technology (2022). DOI: 10.1080/09593330.2022.2052361
  • Systematic and quantitative analysis of two decades of anodic wastewater treatment in bioelectrochemical reactors. de Fouchécour F, Larzillière V, Bouchez T, Moscoviz R. Water Research (2022). DOI: 10.1016/j.watres.2022.118142
  • Low-cost sensors and datalogger open hardware for wastewaters: Setier project. Prost-Boucle S, Kamgang Nzeufo H, Bardo T , Moreau S , Guyard H, Duwig C, Kim B, Dubois V, Gillot S, Clément R. TSM 1/2 2022:35-44 (2022). DOI: 10.36904/tsm/202201035


  • Metataxonomics, metagenomics, metabolomics analysis of the influence of temperature modification in full-scale anaerobic digesters. Puig-Castellví F, Midoux C, Guenne A, Conteau D, Franchi O, Bureau C, Madigou C, Jouan-Rimbaud Bouveresse D, Kroff P, Mazéas L, Rutledge D.N, Gaval G, Chapleur O. Bioresource Technology (2021). DOI: 10.1016/j.biortech.2021.126612
  • Long-term performances and membrane lifespan of full-scale MBR treating filtrate from sludge ultra-dewatering. Mailler R, Pouillaude J, Fayolle Y, Oliveira Filho M, Causserand C & Rocher V. Environmental Technology (2021). DOI: 10.1080/09593330.2021.2010809
  • Development and validation of a comprehensive 1-D model to simulate gas hold-up and gas–liquid transfer in deep air–water bubble columns. Larsson T, Duran Quintero C, Gillot S, Cockx A, Fayolle Y. Chemical Engineering Science, 248, Part B (2021). DOI: 10.1016/j.ces.2021.117210
  • Deterministic processes drive the microbial assembly during the recovery of an anaerobic digester after a severe ammonia shock. Cardona L, Mazéas L, Chapleur O. Bioresource Technology (2021). DOI: 10.1016/j.biortech.2021.126432
  • Time-course analysis of metabolomic and microbial responses in anaerobic digesters exposed to ammonia.  Chapleur O, Poirier S, Guenne A, Lê Cao K-A. Chemosphere, 283 (2021). DOI: 10.1016/j.chemosphere.2021.131309
  • Rearrangement of incomplete multi-omics datasets combined with ComDim for evaluating replicate cross-platform variability and batch influence. Puig-Castellví F, Jouan-Rimbaud Bouveresse D, Mazéas L, Chapleur O, Rutledge D.N. Chemometrics and Intelligent Laboratory Systems, 218 (2012). DOI: 10.1016/j.chemolab.2021.104422
  • Electrochemical analysis of a microbial electrochemical snorkel in laboratory and constructed wetlands. Rogińska J, Perdicakis M, Midoux C, Bouchez T, Despas C, Liu L, Tian JH, Chaumont C, P A Jorand F, Tournebize J, Etienne M. Bioelectrochemistry (2021). DOI: 10.1016/j.bioelechem.2021.107895
  • Surface volatilization modeling of (semi-)volatile hydrophobic organic compounds: The role of reference compounds. Pino-Herrera D.O, Fayolle Y, van Hullebusch E.D, Huguenot D, Esposito G, Pechaud Y. Journal of Hazardous Materials, 424, Part A (2021). DOI: 10.1016/j.jhazmat.2021.127300
  • Comprehensive study of supported PVDF membrane ageing in MBR: A direct comparison between changes at bench scale and full scale. Oliveira Filho M, Mailler R, Rocher V, Fayolle Y, Causserand C. Separation and Purification Technology, 279 (2021). DOI: 10.1016/j.seppur.2021.119695
  • Bacterial Consumption of T4 Phages. Godon J-J, Bize A, Ngo H, Cauquil L, Almeida M, Petit M-A, Zemb O. Microorganisms, 9(9):1852. DOI: 10.3390/microorganisms9091852
  • Circular Economy Applied to Organic Residues and Wastewater: Research Challenges. Bakan B, Bernet N, Bouchez T, Boutrou R, Choubert J-M, Dabert P, Duquennoi C, Ferraro V, García-Bernet D, Gillot S, Mery J, Rémond C, Steyer J-P, Trably E & Tremier A. Waste and Biomass Valorization (2021). DOI: 10.1007/s12649-021-01549-0
  • Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions. Lejal E, Chiquet J, Aubert J, Robin S, Estrada-Peña A, Rue O, Midoux C, Mariadassou M, Bailly X, Cougoul A, Gasqui P, Cosson J-F, Chalvet-Monfray K, Vayssier-Taussat M & Pollet T. Microbiome, 9, 153 (2021). DOI: 10.1186/s40168-021-01051-8
  • Gradual development of ammonia-induced syntrophic acetate-oxidizing activities under mesophilic and thermophilic conditions quantitatively tracked using multiple isotopic approaches. Hao L, Fan L, Chapleur O, Guenne A, Bize A, Bureau C, Lü F, He P, Bouchez T, Mazéas L. Water Research, 204 (2021). DOI: 10.1016/j.watres.2021.117586
  • Size of biological flocs in activated sludge systems: Influence of hydrodynamic parameters at different scales. Pechaud Y, Pageot S, Goubet A, Duran Quintero C, Gillot S, Fayolle Y. Journal of Environmental Chemical Engineering, 9(4). DOI: 10.1016/j.jece.2021.105427
  • Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history. Bize A, Midoux C, Mariadassou M, Schbath S, Forterre P & Da Cunha V. BMC Genomics, 22, 186 (2021). DOI: 10.1186/s12864-021-07471-y
  • Denitrifying bio-cathodes developed from constructed wetland sediments exhibit electroactive nitrate reducing biofilms dominated by the genera Azoarcus and Pontibacter. Philippon T, Tian J, Bureau C, Chaumont C, Midoux C, Tournebize J, Bouchez T, Barrière F. Bioelectrochemistry, 140 (2021). DOI: 10.1016/j.bioelechem.2021.107819
  • Screening design of nutritional and physicochemical parameters on bio-hydrogen and volatile fatty acids production from Citrus Peel Waste in batch reactors. Camargo F.P, Sakamoto I.K, Bize A, Duarte I.C, Silva E.L, Varesche M.B. International Journal of Hydrogen Energy, 46(11):7794-809 (2021). DOI: 10.1016/j.ijhydene.2020.06.084
  • Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions. Camargo F.P, Sakamoto I.K, Delforno T.P, Mariadassou M, Loux V, Midoux C, Duarte I.C.S, Silva E.L, Bize A, Varesche M.B.A. Environmental Management, Volume 291 (2021). DOI: 10.1016/j.jenvman.2021.112631
  • Oxygen-reducing bidirectional microbial electrodes designed in real domestic wastewater. Hoareau M, Erable B, Chapleur O, Midoux C, Bureau C, Goubet A, Bergel A. Bioresource Technology, 326 (2021). DOI: 10.1016/j.biortech.2021.124663
  • Zeolite favours propionate syntrophic degradation during anaerobic digestion of food waste under low ammonia stress. Cardona L, Mazéas L, Chapleur O. Chemosphere, 262 (2021). DOI: 10.1016/j.chemosphere.2020.127932


  • Effect of ammonia exposure and acclimation on the performance and the microbiome of anaerobic digestion. Puig-Castellví F, Cardona L, Bureau C, Jouan-Rimbaud Bouveresse D, Cordella C B.Y, Mazéas L, Rutledge D.N, Chapleur O. Bioresource Technology Reports, 11 (2020). DOI: 10.1016/j.biteb.2020.100488
  • Measurement of Biochemical Methane Potential of Heterogeneous Solid Substrates: Results of a Two- Phase French Inter-Laboratory Study. Ribeiro T, Cresson R, Pommier S, Preys S, André L, Béline F, Bouchez T, Bougrier C, Buffière P, Cacho J, Camacho P, Mazéas L, Pauss A, Pouech P, Rouez M, Torrijos M. Water, 12(10) (2020). DOI: 10.3390/w12102814
  • Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis. Lejal E, Estrada-Peña A, Marsot M, Cosson J-F, Rué O, Mariadassou M, Midoux C, Vayssier-Taussat M, Pollet T. Frontiers of Microbiology, 11-1093 (2020). DOI: 10.3389/fmicb.2020.01093
  • Assessment of the microbial interplay during anaerobic co-digestion of wastewater sludge using common components analysis. Puig-Castellví F, Cardona L, Jouan-Rimbaud Bouveresse D, Cordella CBY, Mazéas L, Rutledge DN, Chapleur O. PLoS ONE, 15(5):e0232324 (2020). DOI: 10.1371/journal.pone.0232324
  • Assessment of substrate biodegradability improvement in anaerobic Co-digestion using a chemometrics-based metabolomic approach. Puig-Castellví F, Cardona L, Jouan-Rimbaud Bouveresse D, Cordella CBY, Mazéas L, Rutledge DN, Chapleur O. Chemosphere, 254:126812 (2020). DOI: 10.1016/j.chemosphere.2020.126812
  • Insights from Microbial Transition State Theory on Monod's Affinity Constant. Ugalde-Salas P, Desmond-Le Quéméner E, Harmand J, Rapaport A, Bouchez T. Scientific Reports, 10 (5323) (2020). DOI: 10.1038/s41598-020-62213-6
  • Colonization kinetics and implantation follow-up of the sewage microbiome in an urban wastewater treatment plant. Morin L, Goubet A, Madigou C, Pernelle J-J, Palmier K, Labadie K, Lemainque A, Michot O, Astoul L, Barbier P, Almayrac J-L & Sghir A. Scientific Reports, 10, 11634 (2020). DOI: 10.1038/s41598-020-68496-z.
  • Fouling mitigation in a semi-industrial membrane bioreactor: Modelling and hydrodynamic characterization. [Limitation du colmatage dans un bioréacteur à membranes à l'échelle semi-industrielle: Modélisation et caractérisation de l'hydrodynamique]. Suard E, Fayolle Y, Clément R, Rocher V, Alliet M, Albasi C, Gillot S. Techniques - Sciences - Methodes, 115 (5), 47:57 (2020). DOI: 10.36904/tsm/202005047
  • Isotopic evidence for alteration of nitrous oxide emissions and producing pathways' contribution under nitrifying conditions. Humbert G, Sébilo M, Fiat J, Lang L, Filali A, Vaury V, Spérandio M, Laverman AM. Biogeosciences, 17(4):979-993 (2020). DOI: 10.5194/bg-17-979-2020
  • Mesure en ligne des concentrations d’ions nitrites et nitrates pour l’optimisation de la dénitrification et la réduction de la production de protoxyde d’azote. Mottelet S, Filali A, Guerin S, Rocher V, Azimi S, Pauss A (2020). Techniques Science Méthodes (acceptée).
  • Emergence of a Synergistic Diversity as a Response to Competition in Pseudomonas putida Biofilms. Bridier A, Piard J-C, Briandet R, Bouchez T. Microbial Ecology, 80:47-59 (2020). DOI: 10.1007/s00248-019-01470-z
  • Integrative analyses to investigate the link between microbial activity and molecules degradation during anaerobic digestion. Cardona L, Lê Cao KA, Puig-Castellví F, Bureau C, Madigou C, Mazéas L, Chapleur O. Journal of Proteome Research (2020). DOI: 10.1021/acs.jproteome.0c00251
  • Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition. Poirier S, Déjean S, Midoux C, Lê Cao KA, Chapleur O. Bioresource Technology, 316, 123952 (2020). DOI: 10.1016/j.biortech.2020.123952
  • Single and combined effects of insecticides on multi-level biomarkers in the non-target amphipod Gammarus fossarum exposed to environmentally realistic levels. Lebrun JD, De Jesus K, Rouillac L, Ravelli M, Guenne A, Tournebize J. Aquatic Toxicology, 218:105357 (2020). DOI: 10.1016/j.aquatox.2019.105357
  • Assessing the quality of fresh Whitemouth croaker (Micropogonias furnieri) meat based on micro-organism and histamine analysis using NGS, qPCR and HPLC-DAD. De Lira AD, Kothe CI, Rué O, Midoux C, Mann MB, Mallmann LP, de Castro, ÍMS, Frazzon APG, Frazzon J.  Journal of Applied Microbiology, 128(5):1448-1459 (2020). DOI: 10.1111/jam.14566


  • Consistent microbial dynamics and functional community patterns derived from first principles. Delattre H, Desmond-Le Quéméner E, Duquennoi C, Filali A, Bouchez T. The ISME Journal, 13:263-276 (2019). DOI: 10.1038/s41396-018-0272-0
  • Six years temperature monitoring using fibre-optic sensors in a bioreactor landfill. Moreau S, Jouen T, Grossin-Debattista J, Loisel S, Mazéas L, Clément R. Geosciences, 9(10):426 (2019). DOI: 10.3390/geosciences9100426
  • Biorefinery for heterogeneous organic waste using microbial electrochemical technology. Desmond-Le Quéméner E, Bridier A, Tian J-H, Madigou C, Bureau C, Qi Y, Bouchez T. Bioresource Technology, 292 (2019). DOI: 10.1016/j.biortech.2019.121943
  • A Generic Multivariate Framework for the Integration of Microbiome Longitudinal Studies With Other Data Types. Bodein A, Chapleur O, Droit A, Lê Cao, KA. Frontiers in Genetics, 10(963) (2019). DOI: 10.3389/fgene.2019.00963
  • Co-digestion of wastewater sludge: Choosing the optimal blend. Cardona L, Levrard C, Guenne A, Chapleur O, Mazéas L. Waste Management, 87:772-781 (2019). DOI: 10.1016/j.wasman.2019.03.016 
  • Ecodesign of microbial electrochemical technologies for the production of waste-based succinic acid thanks to a life cycle assessment. Foulet A, Bouchez T, Desmond-Le Quéméner E, Giard L, Renvoisé L, Aissani L. Journal of Cleaner Production, 225:1155-1168 (2019). DOI: 10.1016/j.jclepro.2019.03.231
  • Modelling gas-liquid mass transfer in wastewater treatment: when current knowledge needs to encounter engineering practice and vice-versa. Amaral A, Gillot S, Garrido-Baserba M, Filali A, Karpinska A, Plosz B, De Groot C, Bellandi G, Nopens I, Takács I,  Lizarralde I, Jimenez J, Fiat J, Rieger L, Arnell M, Andersen M, Jeppsson U, Rehman U, Fayolle Y, Amerlinck Y, Rosso D. Water Science and Technology, 80(4):607-619 (2019). DOI: 10.2166/wst.2019.253
  • Considering the plug-flow behavior of the gas phase in nitrifying BAF models significantly improves the prediction of N2O emissions. Fiat J, Filali A, Fayolle Y, Bernier J, Rocher V, Spérandio M, Gillot S. Water Research, 156:337-346 (2019). DOI: 10.1016/j.watres.2019.03.047
  • Ecological consequences of abrupt temperature changes in anaerobic digesters. Madigou C, Lê Cao KA, Bureau C, Mazéas L, Dejean S, Chapleur O. Chemical Engineering Journal, 361:266-277 (2019). DOI: 10.1016/j.cej.2018.12.003
  • Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater. Delforno TP, Macedo TZ, Midoux C, Lacerda Jr GV, Rué O, Mariadassou M, Loux V, Varesche MBA, Bouchez T, Bize A, Oliveira VM. Science of the Total Environment, 649:482-494 (2019). DOI: 10.1016/j.scitotenv.2018.08.328
  • Electrical resistivity tomography used to characterize bubble distribution in complex aerated reactors: Development of the method and application to a semi-industrial MBR in operation. Suard E, Clément R, Fayolle Y, Alliet M, Albasi C, Gillot S. Chemical Engineering Journal, 355:498-509 (2019). DOI: 10.1016/j.cej.2018.08.014

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